Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0529 ATGGATCACACCCGAGAAAGCAACGTGGTTCAAATAATCGCCGGCGGTGAAAACGTGTCACCCTCCGGCTCCGGCGACCAATCTGTATGGGCAACCGAAGACGATTACAGATTCTTCAACAACGATGTTGAATCCACACCAAAGAGATCGAGAACTTCTCAGGATGCAACGGCGTCGTCTAGCAATAACCGTTCCAAAGCGATTGGTAAAATGTTCTTCAAGACGAAGCTATGTTGCAAGTTCCGCGCCGGCACGTGTCCGTACGTTACGAACTGCAACTTCGCGCATAGCATTGAGGAGCTGCGGCGGCCACCGCCGAACTGGCAGGAGATAGTGGCGGCGCACGAGGATGATAGATCGGTGCCGCCGAGGGAGGAGTTTCAGATTCCGTCGCTTTCAGGGTATTCAGGGGATACACAGAGGTCTTATAAGGGGAGACATTGCAAGAAGTTTTATACTGAGGAAGGGTGCCCCTATGGAGATAGTTGCACTTTTTTGCATGATGAGAATTCGAGGAATAGAGAGAGTGTGGCTATAAGTTTAGGACCTGGTGGGTATGGTGGTGGTGGTGGTGGCGGCAGTGGTGGTGGTGTTACTGGGAGTGGTGGTGTTACTGTTGCTGGGGGTGGTGGTAGTTCAAATTTAAAGCCTTCAAATTGGAAGACAAGGATTTGCAATAAGTGGGAGTTGACAGGGCATTGCCCATTTGGGAACAAATGTCATTTTGCTCATGGTGCTGCAGAATTGAGCCAACATGGTGGGTTTGTGGACGGAGAAAGTAGAGACACAGCTTCTGCTGGTACTCCTGCTGATAATGTGGCCGCATCAGTTATTCTGGTTGCCCATTCTGCTGGTACTCCTTCACAAAGGCCTTCCATTGTGATTCAGAGGCCAGGACAGAGAACTCATAAGAAGTGGAAAGGTCCAGATAAAATAAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 975 0.4933 MDHTRESNVVQIIAGGENVSPSGSGDQSVWATEDDYRFFNNDVESTPKRSRTSQDATASSSNNRSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEDDRSVPPREEFQIPSLSGYSGDTQRSYKGRHCKKFYTEEGCPYGDSCTFLHDENSRNRESVAISLGPGGYGGGGGGGSGGGVTGSGGVTVAGGGGSSNLKPSNWKTRICNKWELTGHCPFGNKCHFAHGAAELSQHGGFVDGESRDTASAGTPADNVAASVILVAHSAGTPSQRPSIVIQRPGQRTHKKWKGPDKISRIYGDWIDDIE* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0529 324 PANTHER CCCH ZINC FINGER/TIS11-RELATED 21 321 IPR045877 GO:0003729
Lan17g0529 324 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Lan17g0529 324 Pfam CCCH-type zinc finger 146 168 IPR041367 -
Lan17g0529 324 ProSiteProfiles Zinc finger C3H1-type profile. 219 247 IPR000571 GO:0046872
Lan17g0529 324 Gene3D - 67 103 - -
Lan17g0529 324 Gene3D - 211 252 - -
Lan17g0529 324 SUPERFAMILY CCCH zinc finger 141 170 IPR036855 GO:0046872
Lan17g0529 324 MobiDBLite consensus disorder prediction 45 62 - -
Lan17g0529 324 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 21 321 - -
Lan17g0529 324 MobiDBLite consensus disorder prediction 42 62 - -
Lan17g0529 324 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Lan17g0529 324 SMART c3hfinal6 219 246 IPR000571 GO:0046872
Lan17g0529 324 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Lan17g0529 324 SUPERFAMILY CCCH zinc finger 70 103 IPR036855 GO:0046872
Lan17g0529 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 245 IPR000571 GO:0046872
Lan17g0529 324 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 97 IPR000571 GO:0046872
Lan17g0529 324 SUPERFAMILY CCCH zinc finger 216 250 IPR036855 GO:0046872
Lan17g0529 324 Gene3D - 135 182 - -
Lan17g0529 324 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0529 Lan-Chr17 4138307 4140868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0529 221 249 C3H Transcription Factor Family AT1G68200 62.069 3.15e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan17g0529 zf-CCCH 4.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0529 - - lang:109349089 537.339