Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0527 ATGAGTTTTCAGGACATCGAGTCCGGGAGGCCTTTCGCTTCACGGCGGAGCCTAATCAACGGTAAGCAGGACCCGACGCAGGCGGTGGCTTCTGGAATATTCCAGATTAACACCGCCGTCTCCACCTTTCAGAGGCTCGTCAATACCCTCGGTACCCCTAAGGACACCCCCGAACTACGCGAGAAGCTGCATAAGACGAGATTGCATATTGGACAATTGGTGAAGGATACTTCGGCTAAACTTAAGGAAGCTAGTGAAATTGATCACCATTCTAATGTTAATGTGAACAAGAAGATAGCAGATGCCAAGCTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTTCTGCTGAGAGGGAAACGGCTTACACTCCTTTTGTTCCACAAACAGCTCTTTCGCTCAGCGATGTAGATATTAGTTCTGATAAGCCTCCCGAGCAGCGTGCCCTTCTCATGGAAATCAAAAGGCAGGAGGTATTATTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGAATTCAAGAAATTCATCAACAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCACGAGCAAGGAACAATGATTGACTGGTTCATGTTATTTGACGTCAAGAATTTCCATTTTGTAGACGATATTGGGTCCAATATCGAGAATTCCCATGCAGCAACTGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAGACACAAAAATCAAATTCGTCTCTGACATGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATCGTGCTTGCTGCTTAG 852 0.4413 MSFQDIESGRPFASRRSLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASEIDHHSNVNVNKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQTALSLSDVDISSDKPPEQRALLMEIKRQEVLFLDNEIAFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVHEQGTMIDWFMLFDVKNFHFVDDIGSNIENSHAATAQAKSQLAKASKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0527 283 Gene3D - 222 283 - -
Lan17g0527 283 SMART tSNARE_6 171 252 IPR000727 -
Lan17g0527 283 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 282 - -
Lan17g0527 283 SUPERFAMILY t-snare proteins 23 215 IPR010989 GO:0016020|GO:0016192
Lan17g0527 283 CDD SynN 23 137 IPR006011 GO:0016020
Lan17g0527 283 CDD SNARE_Qa 179 251 - -
Lan17g0527 283 PANTHER SYNTAXIN 2 282 IPR045242 -
Lan17g0527 283 Gene3D - 20 133 - -
Lan17g0527 283 SMART SynN_4 14 127 IPR006011 GO:0016020
Lan17g0527 283 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Lan17g0527 283 Gene3D - 177 216 - -
Lan17g0527 283 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 215 IPR000727 -
Lan17g0527 283 Pfam SNARE domain 228 278 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0527 Lan-Chr17 4128939 4133340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0527 1 271 SNARE and Associated Proteins AT5G46860 75.646 2.02e-143 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0527 - K08488 gmx:547656 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0527 17 4128939 4133340 Lan18g0775 18 13184765 13188152 LSH
Lan17g0527 17 4128939 4133340 Lan6g0484 6 4039573 4042742 LSH