Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0522 ATGGGTGAAGGAATTCAAGGAAGAGTTCACATGTCTAAGGAAGTTAGAAATGGGTTAGAATATTTGAAGCGGAAAAGGCTTCAGCGAGCTAAAGCTGTAACCGCCACTGACACAAGTATTGCGAACATGATGAATAGAAGTGGAGGAGATGGTTTGAGAGCTTCGGCATCATGTGGCATTGGATTGCATGGCAATGCAGATGTCTTTTCCAAGCGGAAGGTGGATAAGTTTAACACAAAGGATTTAGAATGGACTGATAAAATCCCAGAGTGTCCTGTGTATTCCCCGACGAAGGAGGAATTTGATGATCCTTTGGTTTATTTGCAGAAAATAGCTCCAGAAGCGTGTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTTCCTGCTGGAGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACCACCAGAGTGCAGCCTCTCCGCCTCGCTGAATGGGACAATGAAGACAAAGTCACATTTTTTAAGAGTGGAAGGAATTATACATTACGTGATTACGAGAAAATGGCGAACCAGGTTTTTGCGCGAAGGTATTGCAGTGCTGGGTGTCTTCCAGCCACATACTTGGAAAAAGAGTTCTGGAATGAAATCGGCTGTGGGAATATGGAAAGTGTCGAATATGCATGCGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCCGTGATCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCGAGGCTGCCTAAATCAATTTTGCGGCTCTTGGAAATGTCAATTCCGGGAGTAACGGAACCCATGCTATACATTGGAATGCTATTTAGTATGTTTGCTTGGCATGTGGAGGATCATTACTTGTACAGCATTAATTATCAGCATTGTGGAGCATCAAAAACATGGTACGGTATTCCTGGCCATGCTGCTTTGGAATTTGAAAGGGTGGTGAGAGAACGTGTGTATACGAATGATATATTGTCGACTGATGGGGAAGATGGTACCTTTGATGTTCTCCTGGGGAAAACAACACTATTTCCGCCTAATATTTTGATGGAGCATGAAGTCCCTGTGTACAAGGCTGTTCAAAAACCAGGGGAGTTTATAATAACCTTCCCCAGGGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGTTATTGCTAGTAGGAGATATGCACTACTTAACAGGGTTCCTTTGCTGCCACATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCTATTCATTTTTGGAAGTTGAAGAGTCAGACTTTCCCTCCCCTGACTTGTTATCTCGTAAATGCATTAAGATTGCTTTTGTCAATTTGATGCGTTTCCAGCACTGTGCAAGTTGGCTGCTAATGAAGTCAAGGGCATATATAAGCGTCTCTTCTCATTCCCATGGCACAATCCTCTGTACCCTCTGCAAACGTGACTGTTATATAGCTTATGTTGACTGTAACTGTCACATGCACCCTGTATGCCTACACCATGATATTGAATCTCTTGAGCTCACCTGTGGGAGCAAGTACACACTTTATATTAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGGCATTGAATGAGATACAAAGTGACCAAAATCTATATTCATATTCAAAGTCAAGTATGTTTCAGAGAGCTGAGGCAAATGGATACACACCTTATTGTGAGCTTAAACTTGATTCTGTTATTGAATTTTATGCAAGCCCGGAGCAGTCAGCAAGTATTGAAGAATGTGGTACACAAAGTCAACCTGTTTTTGGACATTGCTCTGAAAATCTTAAACCAGAAGTGGAGCCTCTTCAGAGCTCCTCTACTCTCAAACATGCTGAGGGGCATGCTAATTCCGCATTCCGCACTGTTGACTCTGAAGAGTTTGGTGACAGAATACCCAACAGTGCATGTGAATCTTTGCTATCCCCTGCGCAGCAGTATCATGAAAGAATGTGTAAACAGCCGGGTGATCTTCATAGATTTGTCACAAAGCCCACTATGTGCGATGAGCATGATGATTCTGATTCAGAGATGTTTAGGGTGAAGCGCCCTTCTTCTCTGAAAGTGGAAAGGAGAAGTGCGAATCACGCTATGTCTTCAAAACGTACAAAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAGGAGTAGGCTACCAACGGATTCCAGCAGAACCAATGAATCAAAAAACAAATATAGTCACCCTGTCAATCACAAAGTTGGTGGTGAAATTTCCTCGACCAACAAATTATCAAGTGGAAATGGCATTCCCTTATCTATCAGGTATAAGAAGCTAGGGAATGAAGAGTTAAGCAAGCAACGGGATCACCCCAGGAAAGAAAGGTTGCAGCAGACTTTTAAAGAACCAAATTCCATTGAGATAGGGCCAAAGCGACTTAAAGTTAGAGGCCCTTCATTTTTGGGCTTAGAGAGCAAATCGATCTGA 2526 0.4248 MGEGIQGRVHMSKEVRNGLEYLKRKRLQRAKAVTATDTSIANMMNRSGGDGLRASASCGIGLHGNADVFSKRKVDKFNTKDLEWTDKIPECPVYSPTKEEFDDPLVYLQKIAPEACKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDNEDKVTFFKSGRNYTLRDYEKMANQVFARRYCSAGCLPATYLEKEFWNEIGCGNMESVEYACDVDGSAFSSSPRDQLGNSKWNLKKLSRLPKSILRLLEMSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVRERVYTNDILSTDGEDGTFDVLLGKTTLFPPNILMEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGVIASRRYALLNRVPLLPHEELLCKEAMLLYSFLEVEESDFPSPDLLSRKCIKIAFVNLMRFQHCASWLLMKSRAYISVSSHSHGTILCTLCKRDCYIAYVDCNCHMHPVCLHHDIESLELTCGSKYTLYIREDIMDMEAAAKMFEQEDGALNEIQSDQNLYSYSKSSMFQRAEANGYTPYCELKLDSVIEFYASPEQSASIEECGTQSQPVFGHCSENLKPEVEPLQSSSTLKHAEGHANSAFRTVDSEEFGDRIPNSACESLLSPAQQYHERMCKQPGDLHRFVTKPTMCDEHDDSDSEMFRVKRPSSLKVERRSANHAMSSKRTKQQGLKRLKKVLPEGRSRLPTDSSRTNESKNKYSHPVNHKVGGEISSTNKLSSGNGIPLSIRYKKLGNEELSKQRDHPRKERLQQTFKEPNSIEIGPKRLKVRGPSFLGLESKSI* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0522 841 SMART cupin_9 235 408 IPR003347 -
Lan17g0522 841 Pfam JmjC domain, hydroxylase 268 391 IPR003347 -
Lan17g0522 841 Pfam C5HC2 zinc finger 488 539 IPR004198 -
Lan17g0522 841 SMART JmjN_1 90 131 IPR003349 -
Lan17g0522 841 MobiDBLite consensus disorder prediction 794 824 - -
Lan17g0522 841 MobiDBLite consensus disorder prediction 706 720 - -
Lan17g0522 841 MobiDBLite consensus disorder prediction 733 763 - -
Lan17g0522 841 MobiDBLite consensus disorder prediction 706 777 - -
Lan17g0522 841 Pfam jmjN domain 92 124 IPR003349 -
Lan17g0522 841 ProSiteProfiles JmjN domain profile. 91 132 IPR003349 -
Lan17g0522 841 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 837 - -
Lan17g0522 841 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 50 837 - -
Lan17g0522 841 ProSiteProfiles JmjC domain profile. 238 408 IPR003347 -
Lan17g0522 841 Gene3D Cupin 85 432 - -
Lan17g0522 841 MobiDBLite consensus disorder prediction 794 813 - -
Lan17g0522 841 SUPERFAMILY Clavaminate synthase-like 170 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0522 Lan-Chr17 4076843 4082732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0522 88 554 JUMONJI Transcription Factor Family AT1G08620 31.769 3.18e-61 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan17g0522 JmjC 9.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0522 - - gmx:100798611 1343.18