Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0513 ATGGCTTACGAAGACGATCCGTATCGCGACGAGGATGGAGAAGCGTTGATGAATTATGACGATTTTCAATCGGATCGCGAGGCGTCTCCTGTGCCCAATCAACAAGGCTTAGTGGATGATTTCGAAGAAGAAGACGTTGACAATTTGGGCGGTCGCGATCGGTCTCAGACTCCGGTTTACGACAACAACGATTCGAGGGCGAAGCCGAGGAAGAGGCTCATCAAGAAGAGCGATACTGGGAAACAGCCGGTGGCACCGGAGTTGTATGATGAAGTGGAGGAGGAGGAGGATAATGCTCCGCGGTTTGCAAGGGAGGGATCTGAAGAAGGGGATGCGAGGTATAAGAGGAAGAAGGGGAAGGAGGTTGCTAGTGGGAGTGGGAAGAAGGAGAAGAGGCATAAGGGGGAGAAGAGATTTGCGGGGAGTAACAGCAGTGGTGGTGGGAAGAGTGCCTCGAAATTCGGGAGTTCGAGGAGAGGGATTTCTGGGAATGGAGGGAGGGATCATGATGGTGAGGAAGTTAAGGAGATGTGGGATACGATTGCTGGTGGAGATTCTGAGGATGACCATGAGGGTCAGAGAAATGTGGATGATGACAACTTTATAGATGACACCGGAGTGGAACCTGCTTATTATGGTGATGAGGAACCACGTTCTCCTGGCGATGCTCCCCAGGCTGAGGAAGGGGAAGAGGATGACGAGATTAAGAATCTTTTCAAGATAGGTAAGAAAAAGAAGAAGAACGAGAGAAGTCCTGCTGAAATAGCTTTACTAGTTGAAAATGTCATGGCTGAGCTTGAGGTTACCGCTGAAGAGGATGCTGAACTTAATAGACAGGCGAAGCCTGCGATTAATAAACTCAAGAAGTTGCCTCTTCTTACAGAAGTCCTCTCAAAGAAACAACTTCAACTGGAGTTCTTGGATCATGGAGTGCTGACTTTATTGAAGAATTGGCTCGAGCCTCTTCCTGATGGAAGCTTACCCAATATAAACATACGCACAGCAATTTTACAGATTTTGAATGATTTTCCTATTGATCTAGAGCAGTATGATAGAAGAGAACAGTTGAAGAAGAGTGGTCTTGGGAAGGTAATTATGTTTTTATCGAAGTCTGACGAGGAAATCAATCTAAATAGGAAATTAGCCAAGGACCTGGTTGATAAATGGAGCCGGCCTATATTTAATAAGAGCACACGGTTTGAAGACATGAGAAATGTTGAGGAGGAAAGAGTTCCTTACAGGAGGCCATCAGTTAAAAAGCCAGCAAATAAAGCTGCAGGAATGCAATCTAGAGATGGAGATCTTGATTTGGATCTTTCACAGCCTAGGTCTGGACAGTCCTCCTCCAGGCAACTCACATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGTCCCCAATCTAAAATTGATCCAGAAGAAATTCGAGCACGGGCAAAAGCTGCTGCACAAGATCAGCACCGTATGAAGATGAATAAGAAGTTGCAGCAGTTGAAGGCACCAAAAAAGAAGCAGCTTCAGGCCACAAAATTGAGTGTGGAAGGTCGTGGTATGGTCAAATATTTGTAA 1572 0.4606 MAYEDDPYRDEDGEALMNYDDFQSDREASPVPNQQGLVDDFEEEDVDNLGGRDRSQTPVYDNNDSRAKPRKRLIKKSDTGKQPVAPELYDEVEEEEDNAPRFAREGSEEGDARYKRKKGKEVASGSGKKEKRHKGEKRFAGSNSSGGGKSASKFGSSRRGISGNGGRDHDGEEVKEMWDTIAGGDSEDDHEGQRNVDDDNFIDDTGVEPAYYGDEEPRSPGDAPQAEEGEEDDEIKNLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQAKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILQILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINLNRKLAKDLVDKWSRPIFNKSTRFEDMRNVEEERVPYRRPSVKKPANKAAGMQSRDGDLDLDLSQPRSGQSSSRQLTSRPEATPLDFVIRPQSKIDPEEIRARAKAAAQDQHRMKMNKKLQQLKAPKKKQLQATKLSVEGRGMVKYL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0513 523 ProSiteProfiles TFIIS N-terminal domain profile. 313 396 IPR017923 -
Lan17g0513 523 Coils Coil 259 279 - -
Lan17g0513 523 MobiDBLite consensus disorder prediction 163 201 - -
Lan17g0513 523 MobiDBLite consensus disorder prediction 143 159 - -
Lan17g0513 523 MobiDBLite consensus disorder prediction 408 460 - -
Lan17g0513 523 PANTHER PROTEIN IWS1 HOMOLOG 1 1 523 - -
Lan17g0513 523 MobiDBLite consensus disorder prediction 440 456 - -
Lan17g0513 523 Pfam TFIIS helical bundle-like domain 339 393 IPR017923 -
Lan17g0513 523 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 308 396 IPR035441 -
Lan17g0513 523 MobiDBLite consensus disorder prediction 1 233 - -
Lan17g0513 523 MobiDBLite consensus disorder prediction 481 505 - -
Lan17g0513 523 PANTHER PROTEIN IWS1 HOMOLOG 1 1 523 IPR044204 GO:0009742|GO:0032784
Lan17g0513 523 MobiDBLite consensus disorder prediction 97 130 - -
Lan17g0513 523 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 252 399 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0513 Lan-Chr17 3981501 3985290 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lan17g0513 Med26 5.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0513 K17498 - gmx:100801805 781.171