Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0505 ATGGGTCGGAAGAAAGACGCCGTTTTGATCGCCGAAGAAACCCCCAATCCTCAACTCAATTCCGAGAAGAAGAAGAAAAAGAACAAAAACAAAGGCAAGCACCAAAACGACACCTCTAGTCCCAAAAGAACACTCCACGAACAAAACGACACTGAATCAACCAAAACGAAGAAGATTAAGCACCACATATCAAACGACATCGTCGACGGCGAAACTGAAGTCGTTAACGGAACCAGTGATGAAACGGTGACGGAGCGAGTGGTGGTGGTTACCGGTAAGAATGCCGATGATTCCAAATACACAGCGTTTAAAACCTTCGCTGAAGCAGGGCTTCCAGAGAAAGTACTTGAATGCTGCAAGGGATTCGAGAAGCCTTCTCCGATTCAATCGCGAGCGTGGCCTTTCTTATTGGACGGTCGTGATCTCATTGGAATTGCTGCAACCGGTTCAGGGAAGACATTGGCCTTTGGAATACCGGCGATTATGCATATTATGAAGAAAGGGAAGAATAAAGCGGACCGGGGTCGGAATCCTCTTTGTCTGATGCTCTCCCCCACTAGGGAGCTAGCTCAACAAATATCAGACGTCATTAGTGATGCTGGTAGGTCTTGTGTTGTCGAATCAGTGTGTTTGTACGGTGGAACCTCCAAAGGTCCACAGATCTCATCACTGAAATCTGGCGTTGACATCGTCATTGGAACCCCTGGTCGTATACAAGATCTGATTGAAATGGGCTTCTTATCCTTAAAAGAAGCATCTTTTGTGGTCCTCGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAATAGTTCGCTCCATCCTGGGTCAGACATCTTCTGTTCGTCAAATGGTAATGTTCAGTGCTACATGGCCTTCAGCAGTTCATCAATTAGCACAGGAGTTCATGGATCCTGACCCTGTAAAGGTTGTTGTAGGCTCAGAAGATCTAGCTGCCAATCACGATGTCATGCAGATAGTTGAGGTTTTGGATGAGCGTGCCCGTGATAAACGACTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTGTTGGTTTTTGTTTTGTACAAATTGGAGGCCTCACGAGTAGAAAATATGCTTCAAAAAGGGGGTTGGAAGGCTGTATCGATACACGGGGACAAAGCACAACATGCCCGTACGAAGGCACTATCATTATTCAAGGAGGGAATCTGTCCTTTGATGGTTGCTACTGATGTAGCTGCCCGGGGCTTGGATATTCCAGATGTTGAAGTGGTGATCAACTATAGTTTTCCACTAACAACTGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGTAAGAAAGGTGTTGCACATACATTCTTCACTCAGCAGAATAAGGGACTTGCTGGAGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTGCCAGAGGCCCTTATGAAATTCGGCACACATGTAAAGAAAAAGGAATCCAAGCTTTATGGGGCTCACTTCAAGGAAATTGCTGTTAATGCTCCAAAGTCTAAGAAAATCACATTTAACTCTGACGATGAAGACTAA 1569 0.4525 MGRKKDAVLIAEETPNPQLNSEKKKKKNKNKGKHQNDTSSPKRTLHEQNDTESTKTKKIKHHISNDIVDGETEVVNGTSDETVTERVVVVTGKNADDSKYTAFKTFAEAGLPEKVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHIMKKGKNKADRGRNPLCLMLSPTRELAQQISDVISDAGRSCVVESVCLYGGTSKGPQISSLKSGVDIVIGTPGRIQDLIEMGFLSLKEASFVVLDEADRMLDMGFEQIVRSILGQTSSVRQMVMFSATWPSAVHQLAQEFMDPDPVKVVVGSEDLAANHDVMQIVEVLDERARDKRLVALLEKYHKSQRNRVLVFVLYKLEASRVENMLQKGGWKAVSIHGDKAQHARTKALSLFKEGICPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPEALMKFGTHVKKKESKLYGAHFKEIAVNAPKSKKITFNSDDED* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0505 522 CDD DEADc 120 311 - -
Lan17g0505 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 460 IPR027417 -
Lan17g0505 522 Gene3D - 71 313 IPR027417 -
Lan17g0505 522 SMART helicmild6 366 447 IPR001650 -
Lan17g0505 522 MobiDBLite consensus disorder prediction 1 60 - -
Lan17g0505 522 Pfam Helicase conserved C-terminal domain 338 447 IPR001650 -
Lan17g0505 522 SMART ultradead3 121 327 IPR014001 -
Lan17g0505 522 MobiDBLite consensus disorder prediction 33 60 - -
Lan17g0505 522 PANTHER BNAA08G07020D PROTEIN 22 508 - -
Lan17g0505 522 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 486 IPR001650 -
Lan17g0505 522 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 256 264 IPR000629 -
Lan17g0505 522 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 310 IPR014001 -
Lan17g0505 522 Gene3D - 314 489 IPR027417 -
Lan17g0505 522 CDD SF2_C_DEAD 324 456 - -
Lan17g0505 522 Pfam DEAD/DEAH box helicase 127 298 IPR011545 GO:0003676|GO:0005524
Lan17g0505 522 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 130 IPR014014 GO:0003724
Lan17g0505 522 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0505 Lan-Chr17 3921408 3926657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0505 105 455 Eukaryotic Initiation Factors Gene Family AT3G19760 33.711 9.34e-55 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0505 K14811 - gmx:100305353 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0505 17 3921408 3926657 Lan18g0798 18 13416581 13421503 LSH