Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0492 ATGGTTAAGCATAATAATGTTATCCCCAACGGACACTTCCGTAAGCATTGGCAAAACTATGTTAAGACATGGTTCAATCAACCAGCAAGGAAAACCAGAAGACGGTTAGCTCGCCAGAAGAAGGCTGTCAAGATTTTCCCCAGGCCTACAGCTGGACCTCTTAGACCTGTTGTTCATGGCCAAACTTTGAAATACAACATGAAGGTCAAAGCCGGAAGAGGATTTTCTCTTGAAGAACTGAAGGCTGCTGGTATTCCCAAAAGGCTTGCTCCAACTATTGGAATTGCTGTTGATCACCGACGCAAGAACCGATCTTTGGAAAGTCTGCAAGCTAACGCCCAGAGGCTGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGATTCGACTCCTGAGGAACTTGCAAATGCTACCCAAGTCCAGGGATCATATCTGCCAATCACTACCGAGAAGCCAACTGTGGAGCTTGTGAAGGTTACGGATGAGTTGAAGGCATTTAAGGCTTATTACAAGCTCCGCCTTGAACGCACAAACAAGCGCCATCATGGTGCCAGATTGAAGAGGGCTGCTGATGCCGAAAAGGAAGAGAAGAAGTGA 624 0.4696 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVKAGRGFSLEELKAAGIPKRLAPTIGIAVDHRRKNRSLESLQANAQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPITTEKPTVELVKVTDELKAFKAYYKLRLERTNKRHHGARLKRAADAEKEEKK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0492 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 - -
Lan17g0492 207 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lan17g0492 207 MobiDBLite consensus disorder prediction 188 207 - -
Lan17g0492 207 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lan17g0492 207 Gene3D - 167 207 - -
Lan17g0492 207 PANTHER 60S RIBOSOMAL PROTEIN L13 1 207 IPR001380 GO:0003735|GO:0005840|GO:0006412
Lan17g0492 207 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Lan17g0492 207 Coils Coil 196 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0492 Lan-Chr17 3812107 3814370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0492 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 86.387 2.29e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0492 K02873 - gmx:100805957 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0492 17 3812107 3814370 Lan18g0819 18 13579773 13581753 LSH
Lan17g0492 17 3812107 3814370 Lan6g0439 6 3683736 3685618 LSH