Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0490 ATGACCCTTCTCAGCAGATTCTTCTATAAGAGACCCCCAGATGGGTTACTCGAATTCATCGACAGAGTCTATGTTTTCGATTCTTGCTTCTGCACTGAAGCATTACCTGAAGAAATGTACCAACTCTATCTTCACGAAATCGTTTCCGAGTTGCATGAAGAGTTTCCAGAATCTTCTTTTCTCGCTTTCAATTTCCACGAAGGCGAGAAACGAAGCCATTTCGCTGAAATTTTAGTTGAGTATGATGTAACCGTGATGGATTATCCGAAACAGTACGAGGGTGTTCCACTTTTGCCCTTGTCTCTGGTTCAGCATTTTCTTAGGGTTTGTGAGAGTTGGCTTTCACTTGGGCACCATCAAAATGTGATTTTGTTCCATTGTGAGAGAGGGGCTTGGCCCCTTTTGGCGTTTTTACTTTCGAGCTTTTTGATTTTTAGAAAGGTTCATAGTAGTGAGCGTAAAACCCTCAATATGGTTCATAGAGAGGCACCAAAGGGTTTGTTGCAGATGTTGTCACCTTTTAACCCTTTACCCTCTCAGCTTCGTTATATTCAGTATGTTGCTAGAAGGAACATTGTGCCCGAGTGGCCGCCACCGGAGCGAGCTTTGTCCCTGGATTGTGTCATTCTTAGAGCAATTCCTAGTTTTGATTCACAAAATGGGTGTAGGCCAATGGTTAGGATTTTTGGTAGGAATTTGCTTAGTAATGGTGGGCTGAAAACTCAGATGATCTATTCCACGCACAAGAGAAAGAAGACCTTGAGGCATTACCGCCAGGCAGACTGTGATGTTATTAAGATCGACATTCAATGTTTGGTGGAAGGAGATGTGGTGTTGGAGTGTGTCCATATGGATTTGGATCCGGAGAGAGAAGTGATGATGTTTCGTGTAATGTTCAACACGGCATTTATTCGATCAAACATATTGATGCTAAACGCTGAAAACTTGGACATTCTGTGGGATTCAAAGGAGCGGTTTCCAAAAGGCTTCCGGGCTGAGGTTTTGTTTGGGGATGTTGAAAGCACTAGTCCTCCAAGGGCTCCAACAGCCATGCTAAACGGTGAGGAGAAAGGTGGATTACCAATTGAAGCATTTTCAAAGGTTCAAGAACTTTTTAATGGTGCAGAATGGTTTCAAAGTGGGGATGCTGCTGCTGCTGTCTGGTTGCTTCAACAACTTAGTGTGTTAAATGATGTGAAAGGGTTTTCGAATTTGCAAGGCAAAGGAAGTTGGTATTCATCACCGGCTGACTCTGAAGATGAAAATAATGAATCAAGCATTGCCGATAGTTCAGATGACACATTTGATGTTATTTCAAAGACTTCTTCTGTCGATCCTTCAAAATTATCGACATTTGACACCTCTGATTCATCTCATTTAGCTTTTGAGAGTGATGGTGGAAATCATGCAAGTCTCACTTCAAGAGCACCTGATCAGTCATTGACTGATAATGTTCCATCACCTCATCATTCTCCACCATCACCTTCACCAGTTCCTGCTACTCATCCCAAGCTTCCATCACCAGTACAAGCACCACCTCTCCCACCACTACCCCCACAATTGTCTAATAAGGAGCCTTGCCTACCATTGTCTAAGAAAGTGCCTCCACCTCCTCCACCTCCTCCACCTCCTCAACCAATGTCTAAAGGGATTTCTTTAGTTTCGCCCCCACCACCTCCTAACAAGAAAAATGCACCACCGCTGCCTCCACCTTTGCCACCCTCTCCTTTAGGTCGTAACACTAATAATGCTACTATCCCGACTCCACCCCAACCCCCTCCGACACCTATGCAACTAGGTTCAGCTCCCCCACCTCCACCTCCGCCTCCGCCTCCTCCAGGACCTGTAAGTACAGGTTCAGCCCCTCCACCTCCGCCTCCGCCTCCCCCAGGATCAAGGCAAACAGGGTCTGCCCCTCCACCTCCCCCAGGATCTAGGCAAACAGGGTCAGCCCCACCACCTCCCCCTCCACCTCCACCAGGATCTCGACAAACAGGGTCAGCCCAACCGCCTCCACCTCCTTCAGGATCTCGACAAACAGGGTCAGCCCCACCGCCTCCACCTCCTCCAAGACCTCGACAAATAGGGTCAGCCCCACCGCCTCCACCTCCCCCAGGATCTCGACAAGCAGGGTCAGCCCCACCGCCTCCACCTCCCCCAGGGTCTAGACAAACAGGTTCAGCCCCACCAACTCCTCCAGGCCTACAAACGGGTTCAGCTCCACCACCTCCACCACCAACACCAAGGCCTCTGAGTGCTCCTCCTCCTCCACCTGGTCGTGGTGCAATGGCAGTGCCACCACCCCCACCTGCAGGAAGGGCCCCCGGTGTGCCACCACCACCAAGCAAAGCTTCTTTAGCACCAACAAATGTTGGAAAAGGTCGTGGGACCGCTGTTGCTCCAAAGAAAACTCTGTTAAAGCCCCTGCACTGGGTGAAGGTTGCCCGGGCAGTAAAAGGGAGTCTATGGGCTGATTCACCGAAACAAGATAATGAATCAAGGGCCCCGGAAATAGATATATCAGAACTTGAGAGCCTGTTTTCAGCAGCATCTGTTTCTGATGGGAGCAGTATTAAAGGTGGAGGTCGACGTGGTACTAACATCAAAAAACCTGAAAAAGTGCAATTGGTTGACTTACGTAGAGCAAATAATTGTGAAATTATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAATGCAGTTCTGGCATTGGATTCTTCTGTTTTGGATATCGACCAGGTTGAGAATCTGATCAAATTCTGTCCGACAAAGGAAGAAATGGAGATGTTGAAGAACTATGCAGGGAACAAGGAAATGCTTGGGAAGTGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCACGGGTAGAAGCCAAGTTAAGGGTGTTTGCTTTTAAAATCACCTTTTCTTCTCAGGTGATTGATTTAAGGGTAAATTTGAAGACAATCAATGATGCAACCATAGAGGTGAAAGAATCTGTGAAATTGCGTCAAATAATGCAGACTATTCTTACTCTGGGCAATGCCTTGAATCAGGGAACAGCACGGGGATCAGCAGTGGGATTCAAATTGGATAGCCTTCTTAAATTATCTGATACTCGTGCAAGAAATAATAAAATGACATTAATGCACTATCTGTGTAAGCTTCTTGCTGAGAAAATGCCAAAATTGCTAGATTTTGACAAGGATCTTGCTCATTTGGAAGCAGCTTCTAAGATTCAATTAAAAGTGTTGGCTGAAGAAATGCAAGCAGTGAATAAAGGATTAGACAAAGTTGAGCAAGAGCTCACTACTTCTGAAAATGATGGTGGTATAGCTACAGGATTTCGTAAGGTACTGAAGAATTTTCTTAATATTGCTGAAGCTGATGTGAGGTCACTTACATCATTGTATGCCGAAGTGGGAAGAAATGCAGACTCTTTGTCCCAGTACTTTGGGGAGGATCCAGCTAGGTGCCCCTTTGAACAAGTGACTCAAATCCTCGTTGTTTTTGTCAAGACATTCAAGAAGTCGAGGGAGGAGAATGAGAAACTAGCAGATGCCGAAAAAAAGAAATTAGAGAAAGAAGCCATGAAGGAAAAGACAGCAAAGAACACTCTTTCCAAAAAAGATAACATTCCATAG 3630 0.4584 MTLLSRFFYKRPPDGLLEFIDRVYVFDSCFCTEALPEEMYQLYLHEIVSELHEEFPESSFLAFNFHEGEKRSHFAEILVEYDVTVMDYPKQYEGVPLLPLSLVQHFLRVCESWLSLGHHQNVILFHCERGAWPLLAFLLSSFLIFRKVHSSERKTLNMVHREAPKGLLQMLSPFNPLPSQLRYIQYVARRNIVPEWPPPERALSLDCVILRAIPSFDSQNGCRPMVRIFGRNLLSNGGLKTQMIYSTHKRKKTLRHYRQADCDVIKIDIQCLVEGDVVLECVHMDLDPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERFPKGFRAEVLFGDVESTSPPRAPTAMLNGEEKGGLPIEAFSKVQELFNGAEWFQSGDAAAAVWLLQQLSVLNDVKGFSNLQGKGSWYSSPADSEDENNESSIADSSDDTFDVISKTSSVDPSKLSTFDTSDSSHLAFESDGGNHASLTSRAPDQSLTDNVPSPHHSPPSPSPVPATHPKLPSPVQAPPLPPLPPQLSNKEPCLPLSKKVPPPPPPPPPPQPMSKGISLVSPPPPPNKKNAPPLPPPLPPSPLGRNTNNATIPTPPQPPPTPMQLGSAPPPPPPPPPPPGPVSTGSAPPPPPPPPPGSRQTGSAPPPPPGSRQTGSAPPPPPPPPPGSRQTGSAQPPPPPSGSRQTGSAPPPPPPPRPRQIGSAPPPPPPPGSRQAGSAPPPPPPPGSRQTGSAPPTPPGLQTGSAPPPPPPTPRPLSAPPPPPGRGAMAVPPPPPAGRAPGVPPPPSKASLAPTNVGKGRGTAVAPKKTLLKPLHWVKVARAVKGSLWADSPKQDNESRAPEIDISELESLFSAASVSDGSSIKGGGRRGTNIKKPEKVQLVDLRRANNCEIMLSKIKIPLPDMLNAVLALDSSVLDIDQVENLIKFCPTKEEMEMLKNYAGNKEMLGKCEQFFMELMKVPRVEAKLRVFAFKITFSSQVIDLRVNLKTINDATIEVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPKLLDFDKDLAHLEAASKIQLKVLAEEMQAVNKGLDKVEQELTTSENDGGIATGFRKVLKNFLNIAEADVRSLTSLYAEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKTFKKSREENEKLADAEKKKLEKEAMKEKTAKNTLSKKDNIP* 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0490 1209 SMART it6_source 532 1207 IPR015425 -
Lan17g0490 1209 MobiDBLite consensus disorder prediction 586 727 - -
Lan17g0490 1209 MobiDBLite consensus disorder prediction 428 487 - -
Lan17g0490 1209 Coils Coil 1077 1104 - -
Lan17g0490 1209 MobiDBLite consensus disorder prediction 488 523 - -
Lan17g0490 1209 Gene3D Protein tyrosine phosphatase superfamily 19 199 IPR029021 -
Lan17g0490 1209 Pfam Formin Homology 2 Domain 800 1171 IPR015425 -
Lan17g0490 1209 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Lan17g0490 1209 MobiDBLite consensus disorder prediction 1190 1209 - -
Lan17g0490 1209 MobiDBLite consensus disorder prediction 409 799 - -
Lan17g0490 1209 Gene3D Formin, FH2 domain 795 1181 IPR042201 -
Lan17g0490 1209 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lan17g0490 1209 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 338 IPR035892 -
Lan17g0490 1209 Gene3D - 200 342 - -
Lan17g0490 1209 Coils Coil 1171 1205 - -
Lan17g0490 1209 PANTHER FORMIN-J 1 576 - -
Lan17g0490 1209 PANTHER FORMIN-J 701 1200 - -
Lan17g0490 1209 MobiDBLite consensus disorder prediction 530 577 - -
Lan17g0490 1209 MobiDBLite consensus disorder prediction 734 785 - -
Lan17g0490 1209 ProSiteProfiles Formin homology-2 (FH2) domain profile. 796 1196 IPR015425 -
Lan17g0490 1209 SMART PTEN_C2_2 198 338 IPR014020 -
Lan17g0490 1209 SUPERFAMILY Formin homology 2 domain (FH2 domain) 741 1190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0490 Lan-Chr17 3769274 3778306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0490 1 440 FH2 protein (formin) Gene Family AT1G31810 72.955 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0490 - - lang:109349024 1596.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0490 17 3769274 3778306 Lan18g0823 18 13605903 13615429 LSH
Lan17g0490 17 3769274 3778306 Lan6g0436 6 3639918 3648972 LSH