Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0484 ATGGGCATTTGTCTGATAAAATGGCAATGGCCATGGCTTCTTTATGTTCTGCTGATAGATATTGTCATCAACAAAAGCAAAGCGATCAGCCGTGATGGTGAGGTACTTGTCAGCTTCAGGACAACAGTTGTTAGCTCAGATGGTGTCCTGGTACAGTGGAGACCTGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAATGTGACCCCAAAACCAAAAGAGTAACACATCTGAGCCTACCTCATCATAAGTTGAGTGGGTCTTTATCACCTGATCTCGGGAAGCTGGAGCATCTGAGGGTTCTTGCTCTGCACGATAACAACTTATATGGGACAATTCCATCAGCATTGGGAAACTGCACTGATTTGCAGGGAATATTCTTACAAGGTAATTACTTTAGTGGAACAATCCCAGGTGAAATAGGAAACCTTTCGCAGCTACAGAATTTGGATATATCAAGCAACTCCCTTAGTGGGACTATTCCACCATCACTTGGGAAGTTGTATAATCTCAAGAATTTCAATGTATCAGCCAATTTTCTGTCTGGAACAATACCTTATGATGGTGTCCTTGCCAACTTCACTGCAAGCTCCTTTGCTGGGAATCGTGGCTTGTGTGGAGTGCAAATCAATTCAACATGTAAAAGTTCACCTGATGCAAATAGTCAATCTAACTTGGATCAAAATGGAAAGAAGAAATATTCTGGCCGGCTGCTCATCAGTGCATCAGCAACTGTGAGTGCACTACTTTTGGTAGCACTTATGTGCTTCTGGGGTTGTTTTCTTTACAAGAAGTTCGGTAAAGATGACAGAATAAGTTTGGCAATGGATGTCAGTGGAGGTTCATCAGTTGTGGTGTTTCATGGAGACCTGCCTTATTCATCGAAAGACATTATTAAGAAACTAGAGACTTTGAATGAGGAAAACATAATAGGGATAGGGGGATTTGGAACCGTTTACAAGCTTGCAATGGATGATAGGAATGTATTTGCTTTGAAAAGGATTGTAAAGTTGAATGAGGGTTTTGATCGGTTTTTTGAGAGGGAACTTGAAATTCTTGGTAGCATCAAACACCGTTATCTACTGAACTTACGAGGATATTGCAATTCGCCTACATCAAAGTTGTTGATATATGACTACCTACCTGGTGGCAGTCTGGACGAAGCTCTTCATGAAAGACCTGAGCCGCTAGACTGGGATTCACGCTTGAATATAATACTGGGAGCTGCAAAAGGACTTGCCTACTTGCGCCATGATTGCTCCCCTAGAATCATACACCGAGACATAAAATCGAGCAACATTTTGCTTGATGGAAACCTGGATGCTCGGGTCTCGGATTTTGGACTCGCCAAACTACTGGAGGATGAAGAAACTCACATCACTACTATTGTTGCTGGAACATTTGGTTATCTTGCACCAGAGTATATGCAAAGTGGCAGAGCAACGGAGAAGACTGACGTCTATAGTTTTGGTGTGCTGACACTTGAAGTAATAAGTGGAAAGCGGCCAACAGATGCGTCCTACATTGAAAAAGGTCTTAATATTGTTGGTTGGTTGAATTTTCTCATTACTGAAAATAGGCCAAGGGAAATTGTTGATTCACTATGTGAAGGGGTGCAGATGGAGAGCCTTGATGCCTTACTCTCTCTGGCTATTCAATGTGTTTCCTCAAATCCAGAAGATCGACCTACTATGCATCGAGTGGTCCAGTTGTTTGAATCAGAGGTTGTTACACCGTGCACAAGCGACTTCTACGACTCCAGCTCTGACTAG 1773 0.4258 MGICLIKWQWPWLLYVLLIDIVINKSKAISRDGEVLVSFRTTVVSSDGVLVQWRPEDPDPCKWKGVKCDPKTKRVTHLSLPHHKLSGSLSPDLGKLEHLRVLALHDNNLYGTIPSALGNCTDLQGIFLQGNYFSGTIPGEIGNLSQLQNLDISSNSLSGTIPPSLGKLYNLKNFNVSANFLSGTIPYDGVLANFTASSFAGNRGLCGVQINSTCKSSPDANSQSNLDQNGKKKYSGRLLISASATVSALLLVALMCFWGCFLYKKFGKDDRISLAMDVSGGSSVVVFHGDLPYSSKDIIKKLETLNEENIIGIGGFGTVYKLAMDDRNVFALKRIVKLNEGFDRFFERELEILGSIKHRYLLNLRGYCNSPTSKLLIYDYLPGGSLDEALHERPEPLDWDSRLNIILGAAKGLAYLRHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLEDEETHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLTLEVISGKRPTDASYIEKGLNIVGWLNFLITENRPREIVDSLCEGVQMESLDALLSLAIQCVSSNPEDRPTMHRVVQLFESEVVTPCTSDFYDSSSD* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0484 590 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Lan17g0484 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Lan17g0484 590 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Lan17g0484 590 Gene3D Ribonuclease Inhibitor 29 215 IPR032675 -
Lan17g0484 590 Pfam Protein kinase domain 307 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0484 590 SMART serkin_6 305 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0484 590 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 3 590 IPR031071 GO:0004672|GO:0005524|GO:0030244
Lan17g0484 590 ProSiteProfiles Protein kinase domain profile. 305 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0484 590 SUPERFAMILY L domain-like 30 196 - -
Lan17g0484 590 SUPERFAMILY Protein kinase-like (PK-like) 287 572 IPR011009 -
Lan17g0484 590 ProSitePatterns Protein kinases ATP-binding region signature. 311 337 IPR017441 GO:0005524
Lan17g0484 590 PANTHER RECEPTOR-LIKE PROTEIN 55 3 590 - -
Lan17g0484 590 Gene3D Phosphorylase Kinase; domain 1 278 380 - -
Lan17g0484 590 Gene3D Transferase(Phosphotransferase) domain 1 381 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0484 Lan-Chr17 3731494 3741427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0484 1 580 Receptor kinase-like Gene Family AT2G35620 73.276 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lan17g0484 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0484 - - gmx:100819230 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0484 17 3731494 3741427 Lan18g0830 18 13661544 13674198 LSH
Lan17g0484 17 3731494 3741427 Lan6g0433 6 3612777 3623370 LSH