Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0480 ATGGGGTCCAATGGCAGCAAAAGCACTTCATCGTCGTGTTCTGGTAGTTTCCGAAAGGGTCGATCTAAAAGCCACGGAGGTTTCCAATCTTATTGTTTAGGAACAACATCTGGATCTCATGATTGTGATAATGACGAGGTTTTTGAGCAGAATAAAGTAAATAGAAATGATGTTATATACACCAGTGACAACGAAATAGACCCAGATGAAGTGAAGATAGATTCTTTTAGAAAAGTTAAATCTGGTGAAATGCCTTGCATGCCCTCTAACGTCAACCTTGATGACTGGGATCACACTGCATCCAGAACCGACAGCAGCTCTGCCCATACTTCTTCATCTCAGTCCTTGAACCCTTCAAGTCGATTCTTTTCTCGCTTAAGTCTTATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACTACCAGTTTGAGGTCATCGAGGCCTTGTCCTGTTTCTTCTGCAAGCCCCTCAATATTTGACAATGAAAATGAGCTTAATCTGCATTCATGGCGTCCTGCCAACTTGGTTAATGGAAATGAACCTCAACAGGGTAGTGACTCACGTAATGCATCTTTTGTTAATCGAGTTCCTGTACAGTATCATGAAGATGCTTCTAATAATTTAAGATCTATCACCCCAGCACTGGGTTCGCCTCAAAACTTGCAGAGAAGTCCCGCAATTTATCCTATCCAGGATGTAGTCACAGATAGAGATGGTACAAGAGAAGTGCTGGATTTAAACTTGTTTACTCCACAAATTCATACAGAGTCTGAAAGTGTTGAGACTAGACATACTGATAGACGAAGTGGAGTTCGAGATCATGTTGAACGTAATGTTCATTTTACAAGAACTTTAAGTGTTGGAAGGCTTCGTCATAGAGTTCTCCGTCGATCAACATTGTCTGATTTCACCTTTTGCCCTTTGCAACAAGAAAGAGAAGTAAGGGATGCTCGTCAGAATAATGGAAGACAAGTAGGGGAGAGAGATACAATAGTGTCACCATCTGATCCTAATGCTGTAAGTTCTCCTTCCACATCTGGATATTCTCCATCTACTATGTCTAGCTCCTCGTTTACCTTCCAAGAGTATGAGGTCGAGACTTCACGATCAAGAGAAACTAGGTATCAGGATCTACTGGAACATAGATCTAATTTCCTCGAACGTAGAAGAAGAATGCGGTCACGGGTTCGTGCTCTTCAGAGGTTGGGTAGCCGATTTGAAAATCTTTCTGGACATGAAAGATCATGCATCTTGTCTGGTCAACTTAGAAATGGTCATTGTTCATGCCGAATCAGCAGTCATGAACGTAGTACCAATTCAAATGATGATACCAATGCTAGAGCTAGTATATCAAGAATTGTTATGTTAGCTGAAGCTTTATTTGAGGTTGTGGACGAAATTCACCAGCAACCTGTGGTATTATCTTCCCGCCCATCTGTGTCTTCTATTGGATCTGTTCCTGCGCCTAATGAAGTCGTGGAATCCTTGCCTGTTAAATTATACACAAAGTTGAACAAATATCAAGAAGATGCTGTACAATGTTATATATGCCTTGCCGAGTATGAGGATGGAGACAGCATGCGAGTACTGCCTTGCCGTCATGAATTTCATAGAACATGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTCGCGGTGACATCTGTGTATCTGATTCATTGTCAACGGAGAACTAA 1710 0.4152 MGSNGSKSTSSSCSGSFRKGRSKSHGGFQSYCLGTTSGSHDCDNDEVFEQNKVNRNDVIYTSDNEIDPDEVKIDSFRKVKSGEMPCMPSNVNLDDWDHTASRTDSSSAHTSSSQSLNPSSRFFSRLSLIPGNISFRLSRTTSLRSSRPCPVSSASPSIFDNENELNLHSWRPANLVNGNEPQQGSDSRNASFVNRVPVQYHEDASNNLRSITPALGSPQNLQRSPAIYPIQDVVTDRDGTREVLDLNLFTPQIHTESESVETRHTDRRSGVRDHVERNVHFTRTLSVGRLRHRVLRRSTLSDFTFCPLQQEREVRDARQNNGRQVGERDTIVSPSDPNAVSSPSTSGYSPSTMSSSSFTFQEYEVETSRSRETRYQDLLEHRSNFLERRRRMRSRVRALQRLGSRFENLSGHERSCILSGQLRNGHCSCRISSHERSTNSNDDTNARASISRIVMLAEALFEVVDEIHQQPVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLNKYQEDAVQCYICLAEYEDGDSMRVLPCRHEFHRTCIDKWLKEIHRVCPLCRGDICVSDSLSTEN* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0480 569 MobiDBLite consensus disorder prediction 314 355 - -
Lan17g0480 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 561 IPR013083 -
Lan17g0480 569 Pfam Ring finger domain 513 556 IPR001841 -
Lan17g0480 569 MobiDBLite consensus disorder prediction 334 355 - -
Lan17g0480 569 SMART ring_2 514 555 IPR001841 -
Lan17g0480 569 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 569 - -
Lan17g0480 569 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 569 - -
Lan17g0480 569 MobiDBLite consensus disorder prediction 1 19 - -
Lan17g0480 569 ProSiteProfiles Zinc finger RING-type profile. 514 556 IPR001841 -
Lan17g0480 569 MobiDBLite consensus disorder prediction 1 26 - -
Lan17g0480 569 SUPERFAMILY RING/U-box 492 562 - -
Lan17g0480 569 MobiDBLite consensus disorder prediction 103 118 - -
Lan17g0480 569 MobiDBLite consensus disorder prediction 88 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0480 Lan-Chr17 3698298 3702486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0480 224 563 C3H Transcription Factor Family AT5G45290 56.857 2.26e-110 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0480 - - lang:109332924 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0480 17 3698298 3702486 Lan18g0837 18 13715656 13720585 LSH