Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0463 ATGAGTGATTCAAAAGTAAACGAGGAAGGTGGCCAGGGCATGCCTATGACCATGGAAGAAAGCCACCAGTTGGTTGATGCAGAGGTTCAAGTTGAACCTGAAGCACCTTCATCTAAGGATGCATTAACTCGCGTGGAAACTGGAAAGGCAGACCCTCCTTCGGAGGATGAAATTGTGAAGCCCGAGAAGGCAGATCTGATTGCGGAGGATGAAAATGTGAAGCCAGGGAAGGCAGAGCCACCTGTTGAGGATAAAAGTTTGAATGCAGGGAAGGAAGAGCTACCCACTGAGGATAATAGTGTGAAACCAGGGAAGGTAGAGGTACCTGCTGAGGAGAATCGTGTGGAGCCAGGGGGTGTTTTAGGGAGCATTCCACAACAAGATGCTCAAAATACTCTTCACTCGGCCCCAGTTGAGCTTGATGCTCAGATTTCAAACAAAATTGAGGGTGAAGAAACTTCTAACGCGAAGACGAATGCTGATAAATTTCCTCAGAGTAATACGGACATCAAGAATGATGATAACAGTTGTCAAAATAATGTTGATGCTGCTGAAACTGCGGCGGAGGTGATGCCTGAAGCTCGTGAAGTGGTTGATAGTAAGCCTTGTGATAACATGGACATCATACTCTCAAGTCATAATGAGCCTACTCCACTGCAAACTGTTCCCGCTGATACAAAATCTGAGATCAAGAATGAATTACAAGTTGCAAATAAGAATAATGAAAAGCTAGCTGTTGAACTTGCAGTTAATGGGAACTCAAACTCAAAGCAGATATCTTTCTTGAACGCAGACCATTGTTATGATGGTAACGAATCTGGAACAGATGAGGAACAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTCAGGGAAAGGAGCATGGAATTCAAACCTCCCAAATTTTATGGAGAAGGACTCAATTGCCTTAAGTTATGGAGATCTGTGATTAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCCTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGACTTTTCGAGGATTCTATGAGAAGGCACTTCTTGATTATGAAAGGCATAAAATAAACGGTGGCGAGCTGGATATGCCCATTGCTGCTGCTTCTCACCCAGAGCCTGTGAACATTGAAAATCAGGCTTCAGCTTCAGCATCAGGTAGAGCACGAAGAGACGCTGCAGCACGGGCTATGCAAGGTTGGCACTCACAACGTCTCCTAGGCAACGGAGAAGTTAGTGACCCTATTATTAAGGATAGGAATTATGCATCTATGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAGCGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCAGCTAGAAGTAAACCATCTAAGCCACAATTGGACACTGCTGTGGTTGATGTTGGACCCCCTGCTGATTGGGTAAAAATCAATGTTCAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGTGAAGAGGTGCATGTTCAATCAGACCCAGCGGGACGCTTGGTCATAAGTGGTGAGCCTGAGAATCCTGATAATCCCTGGGGTGTGACACCTTTCAAAAAGGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCTGCTGTCGTGACGCTGCATGGACAGCTGTTTGTTCGCGCCCCGTTCGAGCAAGCAGAATAG 1725 0.4458 MSDSKVNEEGGQGMPMTMEESHQLVDAEVQVEPEAPSSKDALTRVETGKADPPSEDEIVKPEKADLIAEDENVKPGKAEPPVEDKSLNAGKEELPTEDNSVKPGKVEVPAEENRVEPGGVLGSIPQQDAQNTLHSAPVELDAQISNKIEGEETSNAKTNADKFPQSNTDIKNDDNSCQNNVDAAETAAEVMPEAREVVDSKPCDNMDIILSSHNEPTPLQTVPADTKSEIKNELQVANKNNEKLAVELAVNGNSNSKQISFLNADHCYDGNESGTDEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRSVIRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKINGGELDMPIAAASHPEPVNIENQASASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNYASMQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDVGPPADWVKINVQKTKDCFEVYALVPGLLREEVHVQSDPAGRLVISGEPENPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRAPFEQAE* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0463 574 MobiDBLite consensus disorder prediction 1 126 - -
Lan17g0463 574 Pfam ARID/BRIGHT DNA binding domain 279 363 IPR001606 GO:0003677
Lan17g0463 574 ProSiteProfiles ARID domain profile. 276 367 IPR001606 GO:0003677
Lan17g0463 574 CDD ARID 278 363 - -
Lan17g0463 574 SUPERFAMILY ARID-like 271 378 IPR036431 GO:0003677
Lan17g0463 574 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 19 573 IPR045147 GO:0006357
Lan17g0463 574 Gene3D - 470 574 IPR008978 -
Lan17g0463 574 Pfam Hsp20/alpha crystallin family 491 572 IPR002068 -
Lan17g0463 574 SMART ARID_2 273 363 - -
Lan17g0463 574 Coils Coil 227 247 - -
Lan17g0463 574 MobiDBLite consensus disorder prediction 44 112 - -
Lan17g0463 574 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 19 573 - -
Lan17g0463 574 Gene3D - 276 373 IPR036431 GO:0003677
Lan17g0463 574 SMART bright_3 277 368 IPR001606 GO:0003677
Lan17g0463 574 CDD ACD_sHsps_p23-like 493 569 - -
Lan17g0463 574 MobiDBLite consensus disorder prediction 150 176 - -
Lan17g0463 574 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 474 574 IPR002068 -
Lan17g0463 574 SUPERFAMILY HSP20-like chaperones 483 570 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0463 Lan-Chr17 3517321 3524094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0463 271 572 ARID Transcription Factor Family AT1G76510 65.574 2.10e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lan17g0463 HSP20 1.7e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0463 - - lang:109348972 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0463 17 3517321 3524094 Lan6g0399 6 3194449 3201908 LSH