Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0454 ATGGCACCAGGGACTGGTTGCACATCTGAGACAAGTACAATGAGTGGTGGTGAGAGCCTCGAAGAGGGAAGTAGTAGTGGTGAGTTTAGTATGGAGGATCAGAATGGTGATACGTTGGGAAGTTTGAATCATAATATTGGCAAACCTCCAAGGGATCATTCCTCTATGCGCCATTGCACCAGCTCTTCATGGCTTCTTGAAGCTGAACCAGATATTATGATTATAGGATTGAAATCAACCAGTGAAGAGAAGTCAGAGTTTTCACCTATATTGAGGTCTGGATGCTGTTCTGAGAAAGGACCAAAGCAGTTTATGGAGGATGAATTCATCTGTGTTGATATTCTCGGTGAACATGTTGGTGGAGGAGCAGACCTTCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGGCATGGTGGTATTGATGCAGCATCATTTGTCAAAAAGAACATCCTTAAGTTTATAATGGAAGACTCTCAGTTCCCCTCTGGCACTAAGAAAGCTGTTAAGAATGCATTTATGAAGGTTGATCATGCATTTAAAGATGCTAGTGCTCTTGATAGTTCTTCGGGCACCACTGCTCTCACAGCGCTTGTGTTGGGAAGGGTCATGCTAATCGCCAATGCAGGAGATTCTCGTGCTGTATTAGGAAAAAGGGGTAGAGCTATCGAACTTTCTAAAGACCATAAACCAAATTGCACTTCAGAAAGATTAAGAATTGAGAAACTAGGTGGCGTGATCTATGATGGATACCTCAATGGCCAACTATCGGTGGCTCGTGCTCTTGGAGATTGGCACATCAAAGGTTCCAAAGGTTCTAAAAGCCCCTTAAGCTCAGAGCCAGACTTGGAAGAGATTGTTCTGACAGAAGAAGATGAGTTTTTGATAATGGGTTGTGATGGATTATGGGATGTGATGAGTAGTCAGTGTGCAGTAACAATGGTAAGGAAGGAACTCATGCAACATAATGATCCTACAGCATGTGCCAAGGGACTCGTAAACGAGGCACTTCAACGGAACACATGTGACAATCTAACAGTTTTGATAGTTTGTTTCTCCAAAGATCCACCTTCTAAGATTGAAATTCCTAAATCACATAGGAGGAGAAGTATTTCAGCTGAAGGCCTTGATCTTCTCAAAGGTGTCTTAAATGGAAGATGA 1161 0.4264 MAPGTGCTSETSTMSGGESLEEGSSSGEFSMEDQNGDTLGSLNHNIGKPPRDHSSMRHCTSSSWLLEAEPDIMIIGLKSTSEEKSEFSPILRSGCCSEKGPKQFMEDEFICVDILGEHVGGGADLPSPAAFYGVFDGHGGIDAASFVKKNILKFIMEDSQFPSGTKKAVKNAFMKVDHAFKDASALDSSSGTTALTALVLGRVMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPDLEEIVLTEEDEFLIMGCDGLWDVMSSQCAVTMVRKELMQHNDPTACAKGLVNEALQRNTCDNLTVLIVCFSKDPPSKIEIPKSHRRRSISAEGLDLLKGVLNGR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0454 386 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Lan17g0454 386 SMART PP2C_4 82 350 IPR001932 -
Lan17g0454 386 MobiDBLite consensus disorder prediction 1 42 - -
Lan17g0454 386 CDD PP2Cc 92 352 IPR001932 -
Lan17g0454 386 Pfam Protein phosphatase 2C 94 344 IPR001932 -
Lan17g0454 386 SUPERFAMILY PP2C-like 85 353 IPR036457 -
Lan17g0454 386 MobiDBLite consensus disorder prediction 1 59 - -
Lan17g0454 386 PANTHER PROTEIN PHOSPHATASE 2C 47-RELATED 26 374 - -
Lan17g0454 386 Gene3D - 76 357 IPR036457 -
Lan17g0454 386 PANTHER PROTEIN PHOSPHATASE 2C 26 374 IPR015655 GO:0004722|GO:0006470
Lan17g0454 386 ProSiteProfiles PPM-type phosphatase domain profile. 92 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0454 Lan-Chr17 3445370 3448732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0454 75 384 PP2C-type Phosphatase Gene Family AT3G51470 77.097 1.13e-178 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0454 K14803 - gmx:100786416 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0454 17 3445370 3448732 Lan18g0863 18 14009606 14016502 LSH
Lan17g0454 17 3445370 3448732 Lan6g0411 6 3296237 3299765 LSH