Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0453 ATGTCGTGTTCATCGTCATCAGGGTCAGATGAAGATGACGAGGGATTCGATTCATACCGGAAAGGAGGGTACCACGCCGTTAGGGTCGCCGATCATTTCGCCGCCGGCCGATACATAGCGCAGAGGAAACTCGGTTGGGGTCAGTTCTCCACCGTGTGGCTTGCTTACGATACTCACACTTCTTCATATGTTGCGCTCAAGATCCAGAAAAGTGCACCCGAGTTTGTTCAGGCTGCCCTTCATGAGATCAGTGTTCTTTCATCGATTGCTGATGGTGATCCTTCAAATTCGAAGTGTGTTGCCCAATTGATCGACCATTTTAAGCACACAGGCCCAAATGGGCAGCACCTTTGCATGGTCCTTGAGTTTCTTGGCGATAGCTTGCTCCGTTTGATCAAATATAACCATTACAAAGGCCTTCCGTTGAATAAAGTTAGAGAGATTTGCAAATGCATTTTGATTGGTTTGGATTACTTGCATAGAGAACTTGGTATAATCCACAGTGACCTAAAACCTGAAAACATTCTTCTATTTTCAACCATTGATCATTCCAAAGACCCTTGTAGATCTGGACTCTCTCCAATTCTAGAGAGACCTGAGGGAAACATAAATGTTGGAGTTACAAGTCTTATTGAGAAAAGGTTGAAAAGAAGAGCAAGGAGGGCAGTTGCTAAGATATCATTAAAAAGAGATTCAATAGGAGGAGCAGGTGAACCTCCAAAGTCCGCTAGAAATATTGATGAGATTGATGTGAGATGCAAGATAGTTGATTTCGGAAATGCTTGTTGGGCTGATAAGCCGCTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCTCCGGAAGTTATACTGAAGGCTGGCTATTCCTTCTCTGTCGACATGTGGTCTTTTGCTTGCATAGCTTTCGAGCTTGCCACTGGTGATATGATGTTTACACCCAAGGGTGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTACTGCTGGAGCACAATCCAAGGATTTCTTTGACAGGCATGGGGACCTAAAAAGGATTAGAAGGCTAAAATTTTGGCCACTTGACAAATTGCTCATTGATAGATATAAGTTCTCAGAGAAAGATGCTAGCGAGTTCTCAGAATTTCTTTTACCACTTCTTGATTTTGCAGCAGAGAACCGACCAACAGCGCAACAGTGTCTGCAGCACCCATGGCTGAACTGCAAGGAGTCAACACCAAATGAAATGAGAAATGAATCTAGTGTGGAAAAGGTGAATATTGGTGTGAGTAACCTTAAAATCAAGGTGGGAAAGTGA 1341 0.4407 MSCSSSSGSDEDDEGFDSYRKGGYHAVRVADHFAAGRYIAQRKLGWGQFSTVWLAYDTHTSSYVALKIQKSAPEFVQAALHEISVLSSIADGDPSNSKCVAQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNHYKGLPLNKVREICKCILIGLDYLHRELGIIHSDLKPENILLFSTIDHSKDPCRSGLSPILERPEGNINVGVTSLIEKRLKRRARRAVAKISLKRDSIGGAGEPPKSARNIDEIDVRCKIVDFGNACWADKPLAEEIQTRQYRAPEVILKAGYSFSVDMWSFACIAFELATGDMMFTPKGGGQGFSEDEDHLALMMELLGKMPRKIATAGAQSKDFFDRHGDLKRIRRLKFWPLDKLLIDRYKFSEKDASEFSEFLLPLLDFAAENRPTAQQCLQHPWLNCKESTPNEMRNESSVEKVNIGVSNLKIKVGK* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0453 446 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 6 446 - -
Lan17g0453 446 CDD STKc_SRPK 27 414 - -
Lan17g0453 446 SMART serkin_6 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0453 446 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0453 446 Pfam Protein kinase domain 252 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0453 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lan17g0453 446 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lan17g0453 446 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 6 446 - -
Lan17g0453 446 ProSiteProfiles Protein kinase domain profile. 38 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0453 446 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
Lan17g0453 446 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lan17g0453 446 Gene3D Transferase(Phosphotransferase) domain 1 92 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0453 Lan-Chr17 3439380 3443719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0453 4 429 EF-hand Containing Proteins AT5G22840 49.896 8.77e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lan17g0453 Pkinase 7.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0453 K08832 - gmx:100784192 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0453 17 3439380 3443719 Lan18g0866 18 14025171 14029688 LSH
Lan17g0453 17 3439380 3443719 Lan6g0415 6 3314597 3318510 LSH
Lan17g0453 17 3439380 3443719 Lan17g1236 17 20674499 20677497 PCT
Lan17g1236 17 20674499 20677497 Lan17g0453 17 3439380 3443719 PCT