Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0446 ATGCAAGAACCAAACTTGGGAATGATGGGTGGTGGTTTGGGCGGAGACGGCGGCGACACCCAACACCGACAACTGAAGGCGGAGATAGTTACTCACCCTCTCTATGAGCAGCTTCTAGCTGCACATGTCGCATGTCTCAGAGTTGCAACTCCAATAGATCAATTACCACTCATTGATGCTCAGTTATCACAGTCTCATCATCTTCTTCGTTCTTATCTTTCTCAACAAACTCATTCTCTTTCACCTCATAATCGCCAAGACCTTGACAACTTCATGGTAAAACTACTACTACTAATACTACTATCTCATTTCATAAACGAAAAATGTGTGGATTTCACTGGATCCATGCTATTATTGTTACTACTGCAGGCACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCTTGCCGTGACATTGAAAATACCTTACAAGCTCTCACAGGAGTGAGTTTGGGAGAAGGAAGTGGTGCAACAATGTCAGATGATGAAGATGATATGCAGATGGATTTCTGTTTAGATCAGTCTAGCGCTGAAGGCCATGACATGATGGGATTTGGACTTCCTACAGAATCTGAAAGATCACTTATGGAAAGAGTTCGCCAGGAACTAAAGATTGAACTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGAGAAGAAATATTAAGGAAACGAAGAGCTGGAAAGTTACCAGGTGACACAACTTCTGTGTTAAAGAACTGGTGGCAGCAACATGCCAAGTGGCCATACCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGTTTGCAGCTGAAGCAAATCAACAATTGGTTCATAAACCAAAGGAAACGCAACTGGCATAGCAACTCTCACTCGGTCACCTCTTTGAAGTCCAAGCGCAAGAGATAG 948 0.4293 MQEPNLGMMGGGLGGDGGDTQHRQLKAEIVTHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYLSQQTHSLSPHNRQDLDNFMVKLLLLILLSHFINEKCVDFTGSMLLLLLLQAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDDMQMDFCLDQSSAEGHDMMGFGLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSHSVTSLKSKRKR* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0446 315 Pfam KNOX2 domain 124 163 IPR005541 GO:0003677|GO:0005634
Lan17g0446 315 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 123 315 - -
Lan17g0446 315 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 99 - -
Lan17g0446 315 ProSiteProfiles 'Homeobox' domain profile. 238 301 IPR001356 GO:0003677
Lan17g0446 315 SMART KNOX2_2 78 164 IPR005541 GO:0003677|GO:0005634
Lan17g0446 315 Pfam KNOX1 domain 25 66 IPR005540 GO:0003677|GO:0005634
Lan17g0446 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 123 315 - -
Lan17g0446 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 99 - -
Lan17g0446 315 SUPERFAMILY Homeodomain-like 240 304 IPR009057 -
Lan17g0446 315 SMART KNOX1_2 23 67 IPR005540 GO:0003677|GO:0005634
Lan17g0446 315 SMART HOX_1 240 305 IPR001356 GO:0003677
Lan17g0446 315 CDD homeodomain 241 302 IPR001356 GO:0003677
Lan17g0446 315 Pfam Homeobox KN domain 258 297 IPR008422 GO:0003677|GO:0006355
Lan17g0446 315 ProSiteProfiles ELK domain profile. 218 238 IPR005539 GO:0003677
Lan17g0446 315 Gene3D - 237 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0446 Lan-Chr17 3361452 3366441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0446 1 314 Homeobox Transcription Factor Family AT1G62990 72.222 3.50e-164 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan17g0446 KNOX1 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0446 - - gmx:100787023 496.893