Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan17g0428 | ATGGAAGCAAGCGTTGGATTTTCTTTACTTGTTCTCATGAACCTTGTAGTTTACATGGCTAGCACTGCAGAATCTGCCATTCCGAGAAAATCCACCCCTAACCCTGCAAACTTTATCAAGTCCTCATGTAGAGCCACTTGCTACTCCACCTTATGTGTTCAAAGTCTGTTGGCGTATGCGAATGTGATCGGTCACAGCGAGAAACAACTAGCCATGACAGCTTTGTCAGTGAGCATAACAAGGACGCGGTCATGCGCTTCATTTGTGAAGAACATTGCCAAAGCAAGAGGAATTAAGCCTAGGGAGTACAGGGCTGTGCAGGACTGCATAGAGAACATGAGTGATAGCATTAGCAGCCTTAGCCAATCGGTTCGGGAACTAGGCAAGATGAGTCAGATGGTGGGAGAGGACTTTGCATGGCATATGAGCAATGTACAGACTTGGGTTAGTGCAGCTCTCACAGATGATAACACTTGTCTTGATGGATTTGACGGTTCGGGAATGGATGGAAATGTGAAGGCTGCTATCAGAAACAGGGTTGTTAATGTTGCTCAACTCACAAGTAATGGTCTTGCTTTGGTTAATCGCTTTGCCTCAAGGCACTGA | 606 | 0.4587 | MEASVGFSLLVLMNLVVYMASTAESAIPRKSTPNPANFIKSSCRATCYSTLCVQSLLAYANVIGHSEKQLAMTALSVSITRTRSCASFVKNIAKARGIKPREYRAVQDCIENMSDSISSLSQSVRELGKMSQMVGEDFAWHMSNVQTWVSAALTDDNTCLDGFDGSGMDGNVKAAIRNRVVNVAQLTSNGLALVNRFASRH* | 202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan17g0428 | 201 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 35 | 197 | IPR035513 | - | |
| Lan17g0428 | 201 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 15 | 201 | - | - | |
| Lan17g0428 | 201 | PANTHER | PECTINESTERASE INHIBITOR 9 | 15 | 201 | - | - | |
| Lan17g0428 | 201 | SMART | PMEI_2 | 34 | 193 | IPR006501 | GO:0004857 | |
| Lan17g0428 | 201 | CDD | PMEI-like_3 | 41 | 199 | - | - | |
| Lan17g0428 | 201 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 37 | 197 | IPR035513 | - | |
| Lan17g0428 | 201 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 8 | 195 | IPR006501 | GO:0004857 | |
| Lan17g0428 | 201 | Pfam | Plant invertase/pectin methylesterase inhibitor | 37 | 193 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan17g0428 | Lan-Chr17 | 3179043 | 3179999 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan17g0428 | 29 | 194 | Carbohydrate Esterase | AT3G14310 | 28.743 | 3.80e-20 | 85.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan17g0428 | - | - | mtr:MTR_5g012000 | 268.47 |