Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0419 ATGGAGAGGCACAAATGCAAGCTTTGTTCAAGAACATTCGTTAATGGCAGAGCATTGGGTGGTCACATGAAGGGTCATTTCGCCACCCTCCCTCTTCCTCCAAAGCCAGAACCTGTAACTACACACTGTGATGATGAATATGCTTCTTTGTGTTCTGAAGAAGACCATGAAGAAGAAAGGGAAGAGAAGGATATGGTTTATGGTTTAAGAGAGAAACCAAAGAAAAGTTTCAGACTTGCAGATCCTAAGTTCTCTTTTCAATCTGATACTGTGGTTCAAGATAGAGAGAGTGAGACTGAGTCAAAGAACCCAACTCGTAAAAGATCCAAAAGAAACAGAAAATGCATGGAACCAACCAACAAAGGTAAACTGAGTTTGGTGGAGTTGTCACCAGTGAGTTCAGTTTCTGAGACATGGCCTGAAGAAGATGTTGCTATGTGTCTCATGATGCTTTCAAGGGACACGTGGAAAAAGAAGAATATCATGGAAGAACAACAACAAAAAGTAAAACCAAAGGGGTTGAAGAGAGTTAATGGAAAACACAACAAGTGTGACAAGTGTGGCAAAACTTTTCGATCTTCTCGTGCATTGGGGAGTCACAAAAGTATATGTTATAGTGATGATGATGATAAAAGTAAAATCTTTGAATGCCCATTTTGTTATAAGGTTTTTGGGTCAGGTCAAGCACTTGGTGGTCACAAGAGATCTCATCTTATTCCATCTTCATCTTCAAATGCTAATAACCATTCAACTACTAGTCCTAAATTCAAAGACACCTTCATAGATCTTAACTTTCCACCACAACCAGAAGAAGATGACCTTAGTGTTGTTTCTGATGCCTGA 843 0.395 MERHKCKLCSRTFVNGRALGGHMKGHFATLPLPPKPEPVTTHCDDEYASLCSEEDHEEEREEKDMVYGLREKPKKSFRLADPKFSFQSDTVVQDRESETESKNPTRKRSKRNRKCMEPTNKGKLSLVELSPVSSVSETWPEEDVAMCLMMLSRDTWKKKNIMEEQQQKVKPKGLKRVNGKHNKCDKCGKTFRSSRALGSHKSICYSDDDDKSKIFECPFCYKVFGSGQALGGHKRSHLIPSSSSNANNHSTTSPKFKDTFIDLNFPPQPEEDDLSVVSDA* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0419 280 MobiDBLite consensus disorder prediction 237 258 - -
Lan17g0419 280 SUPERFAMILY beta-beta-alpha zinc fingers 212 238 IPR036236 -
Lan17g0419 280 SMART c2h2final6 4 26 IPR013087 -
Lan17g0419 280 SMART c2h2final6 182 202 IPR013087 -
Lan17g0419 280 SMART c2h2final6 215 237 IPR013087 -
Lan17g0419 280 MobiDBLite consensus disorder prediction 234 280 - -
Lan17g0419 280 Gene3D Classic Zinc Finger 178 253 - -
Lan17g0419 280 MobiDBLite consensus disorder prediction 88 122 - -
Lan17g0419 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 210 IPR013087 -
Lan17g0419 280 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Lan17g0419 280 SUPERFAMILY beta-beta-alpha zinc fingers 3 201 IPR036236 -
Lan17g0419 280 Pfam C2H2-type zinc finger 183 205 - -
Lan17g0419 280 Pfam C2H2-type zinc finger 215 238 - -
Lan17g0419 280 Pfam C2H2-type zinc finger 3 26 - -
Lan17g0419 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 237 IPR013087 -
Lan17g0419 280 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 280 - -
Lan17g0419 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lan17g0419 280 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lan17g0419 280 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 280 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0419 Lan-Chr17 3116788 3118376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0419 1 277 C2H2 Transcription Factor Family AT3G60580 36.909 1.12e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan17g0419 zf-C2H2_6 7.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0419 - - lang:109348901 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0419 17 3116788 3118376 Lan6g0977 6 9177208 9178619 PCT
Lan6g0977 6 9177208 9178619 Lan17g0419 17 3116788 3118376 PCT