Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0414 ATGGGTGCCTACAAGTATGTTTCCGAGCTGTGGCGCAAGAAACAGTCCGATGTCATGCGATTCCTGCAGAGAGTAAGGTGCTGGGAATATAGGCAGCAACCTTCAATTGTTCGTTTGACAAGGCCAACTCGCCCTGACAAGGCCCGTCGATTGGGCTACAAGGCCAAGCAGGGTTATGTGGTGTACCGTGTACGAGTTCGTAGGGGTGGCAGGAAGAGGCCAGTTCCCAAAGGTATTGTATATGGGAAACCCACAAACCAGGGAGTGACCCAGTTGAAGTTTCAGCGATCAAAGAGGTCAGTTGCCGAGGAGCGAGCTGGAAGGAAGCTTGGTGGCCTGAGGGTCCTCAATTCGTACTGGGTCAATGAGGATTCCACTTACAAATATTTTGAGATAATATTGGTTGATGTTGCTCACACTGCCATTAGAAATGATCCAAGAATCAACTGGCTCGTCAATCCAGTGCATAAACACAGGGAGCTGCGCGGTCTTACCTCTGCTGGTAAATCTAACAGAGGTTTAAGGGGCAAGGGACACCGTTACCACAAGAATCGTCCATCTCGCAGGGCTACTTGGAAGAGAAACAATACCCTTTCCCTTCGTCGTTATCGTTAA 615 0.4943 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHTAIRNDPRINWLVNPVHKHRELRGLTSAGKSNRGLRGKGHRYHKNRPSRRATWKRNNTLSLRRYR* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0414 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Lan17g0414 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lan17g0414 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lan17g0414 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lan17g0414 204 MobiDBLite consensus disorder prediction 173 189 - -
Lan17g0414 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Lan17g0414 204 MobiDBLite consensus disorder prediction 163 189 - -
Lan17g0414 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Lan17g0414 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0414 Lan-Chr17 3079353 3081241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0414 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 92.157 1.33e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0414 K02877 - gmx:100810310 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0414 17 3079353 3081241 Lan18g0914 18 14408070 14412001 LSH
Lan17g0414 17 3079353 3081241 Lan17g0950 17 13189228 13191288 PCT
Lan17g0950 17 13189228 13191288 Lan17g0414 17 3079353 3081241 PCT