Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0412 ATGACAACAGTTGAAAACGAAGATCTAGGTTTGAGCCTAAGCTTGAGTTTCCCTCACAATACCCCAAATCATATACAACTAAATCTAATGTCTTCTCCTATTTGTAATCCTCAGAAACCTTCTTGGATTAATGATCCATTCACATCTTCAGATCGAGATTCGGAGACATGCAAAGGAGAACGTGAATCATTCCTTCAAGGAATCGATGTTAATCGGTTACCTTCTGTAGTTGATTGTGAAGATGAGGCTGGTATTTCATCTCCAAACAGCACAATCTCAAGCGTGAGTGGTAAACGTAGCGAAAGAGAACCCAACGGTGAAGAAAACGACATGGATAGATTCTTCTCAAGAGGAATTAGCGACGAAGAAGACGCCGAAACCGCACGAAAAAAACTCAGACTCTCTAAAGATCAATCAGCTATTCTCGAAGAAAGCTTCAAAGAACACAACACTCTTAACCCCAAGCAAAAGCTCGCGCTTGCGAAAAAGTTGGGCCTTCGAGCAAGACAAGTAGAAGTGTGGTTCCAGAACAGAAGAGCGAGGACTAAGTTGAAGCAAACTGAGGTAGATTGTGAGTTTTTGAAACGGTGTTGTGAAAATTTAACGGAGGAAAATCGGAGGCTACAAAAGGAAGTTCAAGAATTAAGAGTACTGAAACTTTCTTCACATTTCTACAATCACATGACCCCACCAACTACCCTCACTATGTGTCCATCGTGTGAGCGTGTCGCTGTTCCACCCTCAGCCGTTGATTTCGCCACGCGTCATCATCCTATGGCTCCAACTCGAGCCCGGCCCATATCTGTTGTTGGCCCATGGGCTTCTGGTGCAGCTCCTATCCCCTTCGATGTTCTTCGCCCCAGATCGTGA 870 0.4437 MTTVENEDLGLSLSLSFPHNTPNHIQLNLMSSPICNPQKPSWINDPFTSSDRDSETCKGERESFLQGIDVNRLPSVVDCEDEAGISSPNSTISSVSGKRSEREPNGEENDMDRFFSRGISDEEDAETARKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKKLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRVLKLSSHFYNHMTPPTTLTMCPSCERVAVPPSAVDFATRHHPMAPTRARPISVVGPWASGAAPIPFDVLRPRS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0412 289 PRINTS Lambda-repressor HTH signature 156 165 IPR000047 GO:0003677
Lan17g0412 289 PRINTS Lambda-repressor HTH signature 165 181 IPR000047 GO:0003677
Lan17g0412 289 Coils Coil 184 218 - -
Lan17g0412 289 PANTHER - 3 281 - -
Lan17g0412 289 Gene3D - 133 183 - -
Lan17g0412 289 SUPERFAMILY Homeodomain-like 119 186 IPR009057 -
Lan17g0412 289 MobiDBLite consensus disorder prediction 81 122 - -
Lan17g0412 289 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Lan17g0412 289 CDD homeodomain 129 186 IPR001356 GO:0003677
Lan17g0412 289 Pfam Homeobox associated leucine zipper 185 216 IPR003106 GO:0006355|GO:0043565
Lan17g0412 289 MobiDBLite consensus disorder prediction 100 122 - -
Lan17g0412 289 MobiDBLite consensus disorder prediction 84 99 - -
Lan17g0412 289 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 3 281 - -
Lan17g0412 289 Pfam HD-ZIP protein N terminus 5 103 IPR006712 GO:0005634
Lan17g0412 289 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Lan17g0412 289 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Lan17g0412 289 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Lan17g0412 289 CDD bZIP 178 216 - -
Lan17g0412 289 SMART HOX_1 127 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0412 Lan-Chr17 3052245 3054303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0412 7 289 Homeobox Transcription Factor Family AT4G17460 60.135 1.02e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan17g0412 HD-ZIP_N 6.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0412 K09338 - gmx:100813367 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0412 17 3052245 3054303 Lan18g0916 18 14433521 14435799 LSH