Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0411 ATGGATGGACAAAGTAGTTACGAGTCTGATTTGGCACTTTTAGACTCAATTCGCCGCCACCTTCTTGACGAATCCGACCCATTTAGAATCGGAGCCCCGTTTTTTAATTCGGGTCAAACACCGTTTAATTCTCGGAGCTCCAGTTTCAGCAACCTGTACCCATGTTTGAGTGACTATTGGGGTGAATTGCCACTAAAAGAAGACGATTCAGAAGACATGGTACTCTACGGTGTTCTCCGCGACGCCGTTAATGTTGGGTGGGTCCCATCTTTCGAAACCGGGTCACCCGATAGTTCCCTATCGAGTTTCGAGGTCAATACGGAGCTTGATCTTTTTCCGGCAGAAAGAATTTCTAACGTTCCGGTTATTCCTCAAGTTAAGGCTGTGCCGGCGGTGGTTCCAGCAAAAGGGAAGCATTACCGCGGCGTGAGGCAACGGCCGTGGGGGAAATTCGCGGCGGAGATTCGTGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTCGGAACATACGAAACTGCTGAGGATGCAGCTTTGGCTTACGATAGAGCCGCGTATCGGATGCGCGGTTCGCGGGCTATGCTGAATTTCCCGCTCCGGGTTAATTCGGGTGAACCGGACCCAGTAAGAGTGACTTCTAAGCGTGCATCACCGGAGCCGTCGTCATCGTCGGAAAATTTTACGGCGGCGAAAAGGAAGAAGAAAACGGTAGGGCCAACGGTGCAAGTGGTGATAGATCAAGTGGCAGAGCACACACGTGGAGAGCAATTATTGGTTAGCTAA 780 0.5167 MDGQSSYESDLALLDSIRRHLLDESDPFRIGAPFFNSGQTPFNSRSSSFSNLYPCLSDYWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSFETGSPDSSLSSFEVNTELDLFPAERISNVPVIPQVKAVPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVTSKRASPEPSSSSENFTAAKRKKKTVGPTVQVVIDQVAEHTRGEQLLVS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0411 259 SUPERFAMILY DNA-binding domain 139 199 IPR016177 GO:0003677
Lan17g0411 259 SMART rav1_2 139 203 IPR001471 GO:0003700|GO:0006355
Lan17g0411 259 CDD AP2 138 197 IPR001471 GO:0003700|GO:0006355
Lan17g0411 259 Pfam AP2 domain 139 189 IPR001471 GO:0003700|GO:0006355
Lan17g0411 259 PANTHER BNAANNG21280D PROTEIN 26 236 - -
Lan17g0411 259 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700|GO:0006355
Lan17g0411 259 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Lan17g0411 259 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700|GO:0006355
Lan17g0411 259 MobiDBLite consensus disorder prediction 203 239 - -
Lan17g0411 259 Gene3D AP2/ERF domain 138 200 IPR036955 GO:0003700|GO:0006355
Lan17g0411 259 PANTHER DNA-BINDING DOMAIN 26 236 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0411 Lan-Chr17 3045770 3047068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0411 1 258 AP2-EREBP Transcription Factor Family AT4G17500 52.500 7.88e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan17g0411 AP2 9.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0411 K09286 - gmx:100819649 326.635