Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0407 ATGACTGCTTCTTCTGCAAATCAACTTATCTCTATTAGTCCTGATGAACTCAGGTTTCATTTTGAGCTGGACAGGCAAACATTTTGCGATCTTAAAGTTGCGAATAACACAGATAGCTATGTTGCTTTCAAGGTCAAAACCACTTCACCGAAGAAGTACTTTGTACGACCGAACACTGGTGTTATACAGCCCTGGGATTCTTGTATCATTAGAGTTACCCTCCAAGCCCAACGTGAATACCCTCCGGACATGCAATGCAAAGACAAATTTCTCTTGCAGAGTACTGTAGTGAATCAAAATATTGATGTTGATGATCTCCCACCAGATACTTTTAGTAAGGAAAGTGGAAATACAATAGAGGAGTTGAAACTAAGAGTTGCATATATCTCTCCTAACTCACCCCAAGGAAGCTCCGAAGATGATGCATTGAAGAACTCACAAAAACTTGATGCATCTTCCGTTTTACAGCACCTGAAGGAAGAAAGAGACGCTGCTGCCAGGCAAACGCGACAACTGCAACAGGAACTGGACATTCTAAAAAGGCGAAGAAGCCGAAGTAATCCTGGGTTTTCCTTCACCTTCGCGATTTTTGTGGGTGTCATTGGAATTTTGCTTGGCTTTCTTTTGAAACTTATATTCTCTTCCCCATCTACAGAATGA 660 0.4152 MTASSANQLISISPDELRFHFELDRQTFCDLKVANNTDSYVAFKVKTTSPKKYFVRPNTGVIQPWDSCIIRVTLQAQREYPPDMQCKDKFLLQSTVVNQNIDVDDLPPDTFSKESGNTIEELKLRVAYISPNSPQGSSEDDALKNSQKLDASSVLQHLKEERDAAARQTRQLQQELDILKRRRSRSNPGFSFTFAIFVGVIGILLGFLLKLIFSSPSTE* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0407 219 Coils Coil 155 182 - -
Lan17g0407 219 Pfam MSP (Major sperm protein) domain 10 104 IPR000535 -
Lan17g0407 219 PIRSF VAMP_assoc_prot 2 153 IPR016763 GO:0005789
Lan17g0407 219 PIRSF VAMP_assoc_prot 138 211 IPR016763 GO:0005789
Lan17g0407 219 Gene3D Immunoglobulins 2 133 IPR013783 -
Lan17g0407 219 PANTHER VESICLE-ASSOCIATED PROTEIN 2-1 4 216 - -
Lan17g0407 219 ProSiteProfiles Major sperm protein (MSP) domain profile. 9 129 IPR000535 -
Lan17g0407 219 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 4 216 IPR016763 GO:0005789
Lan17g0407 219 SUPERFAMILY PapD-like 5 140 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0407 Lan-Chr17 3009276 3013589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0407 - - gmx:100794270 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0407 17 3009276 3013589 Lan18g0922 18 14472162 14476495 LSH
Lan17g0407 17 3009276 3013589 Lan6g0325 6 2510506 2521632 LSH
Lan6g0982 6 9217518 9222201 Lan17g0407 17 3009276 3013589 PCT
Lan17g0941 17 13027992 13032315 Lan17g0407 17 3009276 3013589 PCT