Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0405 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACTAGTACACCACTTTGGCGCAATGGGCCACTGGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAGGTGATGATTATGAGGATCAAAGGATTTCCAGGGTAAAGAGTATGCAGTCAAATAAGAATAAAGAAGTGAAAGCGCTCAAACGAAAGCTGAATATTGATAATGTTGTATATGGAGGGCTTTCTCCTGATTATAACCTGGGATTCCGGAAGGCTTTAGATGAAGATACAAGTAATCGATCAAGCTCAGGATCAGCCATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCGTGGATGCTAATGATTTGACAGGTCATGCTCAGCCAGTGGTGTGGGATACTACGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGTGCAAAGCCTTCTTCTGTTGAGAAGCTAACGAAAGATTTATGCACTATTCTTCACGAACAGCAGTCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGCGAAACACCAATGATCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCTAGCCACATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCACTTGATAATAAACAATGCACAATGAATGAGGCGGCACATTCATATTCTGCTGCCATTCTTATGCATAATGATTTCAGTGGTATGAATTTCTCATCCATGGGAGTTGAAAGGGAGAAGTCTCACCTTGAAAGAGTGCAAATCCTTGGAAATCATGATTCACCACAGCACTTAATAGACTTAAATGATATAGTAAACTATGAGGAGTTCTTGAAAAACTTGACAAATGAAGAGCAGCAGCAACTACTGAAGCTTCTTCCTGTGGTTGATGCTGTTAAACTTCCTGATAGGTTAGCATATGATTGCATTTGTTATTTATCAACTTTTTGTTGTTATTGA 1023 0.4135 MGKQGPCYHCGVTSTPLWRNGPLEKPVLCNACGSRWRTKGTLANYTPLHARAEGDDYEDQRISRVKSMQSNKNKEVKALKRKLNIDNVVYGGLSPDYNLGFRKALDEDTSNRSSSGSAISNSESCAQFGGVDANDLTGHAQPVVWDTTVPSKKRTCVGRAKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMISVEIGHGSILIRHPSHIAREEESEASSLSLDNKQCTMNEAAHSYSAAILMHNDFSGMNFSSMGVEREKSHLERVQILGNHDSPQHLIDLNDIVNYEEFLKNLTNEEQQQLLKLLPVVDAVKLPDRLAYDCICYLSTFCCY* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0405 340 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Lan17g0405 340 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lan17g0405 340 PANTHER GATA TRANSCRIPTION FACTOR 26 1 327 - -
Lan17g0405 340 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lan17g0405 340 PANTHER OSJNBB0038F03.10 PROTEIN 1 327 IPR044589 -
Lan17g0405 340 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Lan17g0405 340 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Lan17g0405 340 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Lan17g0405 340 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0405 Lan-Chr17 2997860 3002157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0405 1 340 C2C2-Gata Transcription Factor Family AT4G17570 55.143 1.14e-113 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan17g0405 GATA 3.4e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0405 - - lang:109330483 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0405 17 2997860 3002157 Lan18g0381 18 7222358 7227635 LSH
Lan17g0405 17 2997860 3002157 Lan6g0954 6 8936493 8942588 PCT
Lan17g0405 17 2997860 3002157 Lan18g0381 18 7222358 7227635 PCT
Lan17g0405 17 2997860 3002157 Lan17g0964 17 13548925 13554293 PCT
Lan6g0954 6 8936493 8942588 Lan17g0405 17 2997860 3002157 PCT
Lan18g0381 18 7222358 7227635 Lan17g0405 17 2997860 3002157 PCT
Lan17g0964 17 13548925 13554293 Lan17g0405 17 2997860 3002157 PCT