Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0392 ATGCATTGTGTTTCTGCTAGAACTCGTTCTAAACGATCACTACTCCACAATCTGAAACAGAGCACCACCACCAACAACAACCATGTTTCTGTTTCCGAGGTTGTTGGCCTCAGTTCCGACAATGATGAAGAGGAATATGAAACCGTTATTGACTATGGAGAAGAAGAAGAAGAAGCCACTGAATTTAGTGCAATTGAGAATGATGATGATGGTGAAGTTGTCTCAGATTATAAGGAAGAAGATAATGAGGTGCACATTGTGAAGGGAGTGAAGAATGAAGTAAAATGCGGTAATGTAGAAAAGAAGGAGGGTAAAAGAGGAAGAGGGAGACCAAAAAGAAAGGAGGGTGAAGGTGAGGTTGGAGGATTAAGGAAGAGGAGAATGTTGGGGCTTGATATTTTGATTGATGAGAATAATAGTCAAGAGAATAAGTGTGCTGCAAAAAGAACTCGTTCACATTTTCTTAGTAAGAACAAGTTGAAGTTTGGGACTATTGCTAAACCAATATGCATTGATGATAATGATGAAGAGAATGAGGAAGAAAAGGAAAGTGATTTTGTTCATCACACTCACGAGGAGGAAGCAAGTGATTCAAAATCTAAGGAAGAAAAAGCAAGTGGGTCTGAATCTGATGAACAATACTCTAGGGGTTTCAAGAGAAAAGGCCATGCATGTGTGCACAATAAAGGGAAAAGGCACAAAAGGCAAGGTTTTGATGTGGTTAAGATTCTCAAGGATTCTATATATGGTAAAGGGGAGATGGTTTTGAAGGCAAGAGACAAGGAACAAAATCCTTGTACTGATTTGCCAATCAAGTTTTCATTTTTACATAAGGGTCCAAAAGAAGCAGAGAAGTCAGAAGAAGCATTAGAACCAACTTGGGCCAAAATAGAGAGTGGTCTTGATGGTACTCCTGATTCGTATGAAGAGGAATATGAATCCTCTGCACTCCCAAAGAAGAAACACACCTCATCCAAATTTTCTTTTTCACATAAGGATTCAAAAGCAACACAGATATCAGAAGAAGAAAATGGACTAGAACCTATTTGGGATGAGATGGAGCACGGTCTTAATGATACTCCTAATTCTTGGGTTAGTTGTCACAAGAGAGAAGCCTCCACATGCTGCAGAAAGAAGAGACATGTTCACAGTGATCCAAATAACATTGGTGTGCTTAATAATGTTCTCCAGGATTATATCTATGCTGAGGGAGAGGTACCTATGGAAGAGCCAATCAACAATGAACTAAACCCAAACAAGGAGTTGCTGCCAACGTTTCCTTTTATGTATGTGAAGCCAAAATCACCAGAGAAATCAGATGAAGAGAAAGAATTAGATGCACTGTGGGCTCAAATGGATCTTGCTCTTTATGCTACACAGGAAAAAATCTCTAGTCCTGCTTCTCAGGTCCAAAATGATTTTGATTCTGATAATGATCAATGTCCAAAGGATGAAGTTAGCATAGCTACAACTTGTCGTCAAGGGAAGCATCATCTCATTCTTAATGATGAAATAGGACTTGTATGTGCATACTGCTTACATGTTGGATTGGATATAAAGGATTATCTACCTCCCTTTAGTGAAAATCCATTTGGAAAGTCAAACAGGAGAGAATCTTACATTAAGGACCATGCACACCACTCTGTCTTTAATGATTTTCAGGATCGAGTTACAGGATATGATGATGGTGATGATAACCTCTGTGATTATACCGAAACAGTGTGGGCGATAATGCCAGGTCTGAAAAAGAATTTGTATCCTCATCAGTGTGAAGCTTTTGAATTTCTTTGGAAGAATTTAGCTGGAGGGATTTTTCTTGATCAGTTGAAAAAACAAGAAGATTTTGATGGAGGTGGGTGCATTATATCTCATGCTCCTGGCACTGGGAAAACCCGTCTCACTATTACATTTCTCCAGGCATACATGAAGTTATATCCAAAATGCAGATCAATGATTATTGCTCCTAAAGGCATGCTTCTTACATGGGAAGAGGAGTTTAGAAAATGGAATGTTGACATTCCATTTCACAATTTGAACAATCTTGACTACTCTGGCAAGGAGAGTGAGGTAGCTATGAATCTTGTGACCGGTTCTGGTTGTAACATTTCAAGCCGATTATTGAAGTTATATTCCTGGAAGTGTAATAAAAGCATCTTGGGAATTAGTTACAAATTGTTTGAGCAACTTACTAGGCAGGACTGCAGTGATAAGGAGTTAAGGAAATTCCTTCTTGAACATGCTGGTTTATTAGTTCTTGATGAGGGACACACTCCTCGCAATTCCCGAAGTCTTATATGGAAAGCTGTCTCACAATTGCGGACGAAAAAGCGGATAATCCTCTCTGGAACTCCATTTCAGAATAATTTTGATGAGCTTTACAACACACTCTGCTTGGCTAGGCCCAAGTTTTCTGATTGGAATCCATCTAGAGGGAAGGAGGTATTCAAGGATAAGCCAGGGCGCCCAAGAAAGGAATATGTTGGGAAATGGAGGCATCTGACGAAATCTTTCGACAAAGTTACTGATTATAGTAGAAAATTCAAGATAGCGAAAGAGGTCAGAAACATGATACATTCTTTTGTTCATGTACACAAGGGAACAATACTGCAAGAAAGTCTTCCTGGAATGAAGGAGTTCGTAGTTATATTAAAGCCAACCCGGTTGCAGAAAGAACTTCTTGAGGAGATTCAGAGAAAAAGGAAAAGACTTTCTCATGGAAACCAGGCACCCTTGAATGTGATGAAAATAGAATATGAGGAATCTGTAACTGCTGTTCATCCTGCATTGTTTGATCTATCTGAAGGCAAGGGGAAGTTTGAAAGGCTTAGATTGAACCCGGTGGAAAGTTCGAAAACAATTTTTTTAATGGAACTCATCAGACTTAGTGAGCTTGTGAATGAAAAGGTCTTAGTTTTCTGTCAATATATTGATCCCTTGAAGCTTATGGCAAGCCAGCTTAAACATCATTTTAGTTGGACAGAAGGAAGAGAGGTCTTACATATGCATGGACAAGTCGAAGCGAAGTTGCGTCAAGCTTCAATAAATTCTTTTAACAATCCCAATAGCAAAGTAAGGGTAATGCTAGCATCAACCAAGGCTTGTTATGAAGGTATCAGTTTAGTTGGTGCATCAAGGGTTGTTTTGCTGGATGTTGTATGGAATCCCTCAGTGGAGAGGCAAGCAATTAGCCGCGCTTATCGACTCGGGCAGAAGAAATATGTGTACACTTACCATCTGATCACAGCAGGAACAAGAGAAGAAGAAAAAATCTGTCGTCAAGCTGAGAAAGATCAGCTATCAGAGTTGATGTTCTTTAATTCTGATGGGGATCAGCAGCATCATGAAAAAGAATCATCTGCAGAATTGGAAGATCAAATTTTGGAAGAGATGGTTCAACAACAAAAGTTTAAACATGTGTTTGAAAAAGTAGCCATTAAGAAACACACTCTTCTTTGA 3456 0.3915 MHCVSARTRSKRSLLHNLKQSTTTNNNHVSVSEVVGLSSDNDEEEYETVIDYGEEEEEATEFSAIENDDDGEVVSDYKEEDNEVHIVKGVKNEVKCGNVEKKEGKRGRGRPKRKEGEGEVGGLRKRRMLGLDILIDENNSQENKCAAKRTRSHFLSKNKLKFGTIAKPICIDDNDEENEEEKESDFVHHTHEEEASDSKSKEEKASGSESDEQYSRGFKRKGHACVHNKGKRHKRQGFDVVKILKDSIYGKGEMVLKARDKEQNPCTDLPIKFSFLHKGPKEAEKSEEALEPTWAKIESGLDGTPDSYEEEYESSALPKKKHTSSKFSFSHKDSKATQISEEENGLEPIWDEMEHGLNDTPNSWVSCHKREASTCCRKKRHVHSDPNNIGVLNNVLQDYIYAEGEVPMEEPINNELNPNKELLPTFPFMYVKPKSPEKSDEEKELDALWAQMDLALYATQEKISSPASQVQNDFDSDNDQCPKDEVSIATTCRQGKHHLILNDEIGLVCAYCLHVGLDIKDYLPPFSENPFGKSNRRESYIKDHAHHSVFNDFQDRVTGYDDGDDNLCDYTETVWAIMPGLKKNLYPHQCEAFEFLWKNLAGGIFLDQLKKQEDFDGGGCIISHAPGTGKTRLTITFLQAYMKLYPKCRSMIIAPKGMLLTWEEEFRKWNVDIPFHNLNNLDYSGKESEVAMNLVTGSGCNISSRLLKLYSWKCNKSILGISYKLFEQLTRQDCSDKELRKFLLEHAGLLVLDEGHTPRNSRSLIWKAVSQLRTKKRIILSGTPFQNNFDELYNTLCLARPKFSDWNPSRGKEVFKDKPGRPRKEYVGKWRHLTKSFDKVTDYSRKFKIAKEVRNMIHSFVHVHKGTILQESLPGMKEFVVILKPTRLQKELLEEIQRKRKRLSHGNQAPLNVMKIEYEESVTAVHPALFDLSEGKGKFERLRLNPVESSKTIFLMELIRLSELVNEKVLVFCQYIDPLKLMASQLKHHFSWTEGREVLHMHGQVEAKLRQASINSFNNPNSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKYVYTYHLITAGTREEEKICRQAEKDQLSELMFFNSDGDQQHHEKESSAELEDQILEEMVQQQKFKHVFEKVAIKKHTLL* 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0392 1151 SMART helicmild6 980 1069 IPR001650 -
Lan17g0392 1151 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 957 1118 IPR001650 -
Lan17g0392 1151 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 611 802 IPR014001 -
Lan17g0392 1151 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 414 1146 - -
Lan17g0392 1151 Gene3D - 564 828 IPR038718 -
Lan17g0392 1151 Pfam SNF2-related domain 589 901 IPR000330 GO:0005524|GO:0140658
Lan17g0392 1151 MobiDBLite consensus disorder prediction 101 121 - -
Lan17g0392 1151 CDD SF2_C_SNF 947 1080 - -
Lan17g0392 1151 MobiDBLite consensus disorder prediction 280 341 - -
Lan17g0392 1151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1107 IPR027417 -
Lan17g0392 1151 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 414 1146 IPR044567 GO:0080188
Lan17g0392 1151 MobiDBLite consensus disorder prediction 182 219 - -
Lan17g0392 1151 Pfam Helicase conserved C-terminal domain 955 1069 IPR001650 -
Lan17g0392 1151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 810 IPR027417 -
Lan17g0392 1151 MobiDBLite consensus disorder prediction 173 231 - -
Lan17g0392 1151 SMART ultradead3 581 815 IPR014001 -
Lan17g0392 1151 Gene3D - 874 1149 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0392 Lan-Chr17 2922358 2926405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0392 966 1104 RAD5 or RAD16-like Gene Family AT5G05130 37.857 2.07e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan17g0392 SNF2_N 4.9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0392 K10875 - jre:109003751 718.383