Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0389 ATGAAGTGCTTCTTCTTCAAACATAAATCCGAAATCAACCCAGAATCACAAAGCCCAGGCAAGAAGAAAACCCGGACTTTGAATGGTGCAACCAAATCTACGAGTTCCATATCATCACCAAGGAGCGTTATAGAATTGTACAAAGAGAAAGAACAAAACTTCAGAGTTTTTACTATGCGAGAACTCGTAGAGGCAACAAAGGGTTTCAATAGGATGTTGAAAATTGGAGAAGGTGGTTTTGGGAGTGTATACAGAGGAACGATTATTCCTCAAGATGGAGAAGGTGATCCAAGTGTGGTTGCAATCAAAAAGCTCAACACACGTGGCCTCCAGGGGCATAAAGAATGGCTTGCTGAAGTTCAATTTCTGAGCATTGTTGATCACCCTAATTTGGTTAAGCTTTTGGGATATTGTTCAGTAGATAGAGGAAGAGAAATCCAACGGCTTTTGGTGTATGAGTTCATGCCCAACAGGACCCTTGAAGATCACATTTTCAATCCTTCTTTCCCACACTTGTCTTTGAAAAGAAGATTGAAGATCATGCTTGGTGCTGCCCAAGGATTACATTACCTACATGAAGGGTTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCTAATGTGTTACTGGATGCAAATTTCCATCCGAAGCTCTCAGATTTCGGTCTAGCTAGGGAAGGTCCACAAGGTGATAATACTCATGTATCTACTGCGGTAGTTGGGACACAGGGATATGCTGCCCCAGAGTATGTGGAAACAGGCCATCTAAAAGTTCAGTGTGACATTTGGAGTTTTGGTGTGGTACTGTATGAGATCCTCACAGGAAGAAGGGTATTAGAAAGAAAACGTCCAAAAGGGGAACAAAGGCTTCTAGAGTGGGTTAAAAATTATCCTGCTGATAGTAGCAGATTCAGCATCATAATGGACCCACGTTTAAGGAACCAATATTCTTCTGGTGTAGCTCGTAAAATAGCCAAGTTAGCAGATAGTTGCTTGCAGAAGAATCCTGAAGATAGGCCATCCATGAGTCAAATAGTAGAAAGCTTGAAGCAAGCATTGTAA 1065 0.4169 MKCFFFKHKSEINPESQSPGKKKTRTLNGATKSTSSISSPRSVIELYKEKEQNFRVFTMRELVEATKGFNRMLKIGEGGFGSVYRGTIIPQDGEGDPSVVAIKKLNTRGLQGHKEWLAEVQFLSIVDHPNLVKLLGYCSVDRGREIQRLLVYEFMPNRTLEDHIFNPSFPHLSLKRRLKIMLGAAQGLHYLHEGLEVQVIYRDFKSSNVLLDANFHPKLSDFGLAREGPQGDNTHVSTAVVGTQGYAAPEYVETGHLKVQCDIWSFGVVLYEILTGRRVLERKRPKGEQRLLEWVKNYPADSSRFSIIMDPRLRNQYSSGVARKIAKLADSCLQKNPEDRPSMSQIVESLKQAL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0389 354 PANTHER OS01G0588500 PROTEIN-RELATED 19 354 - -
Lan17g0389 354 MobiDBLite consensus disorder prediction 9 36 - -
Lan17g0389 354 MobiDBLite consensus disorder prediction 19 36 - -
Lan17g0389 354 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0389 354 ProSitePatterns Protein kinases ATP-binding region signature. 75 104 IPR017441 GO:0005524
Lan17g0389 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lan17g0389 354 Gene3D Phosphorylase Kinase; domain 1 48 154 - -
Lan17g0389 354 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0389 354 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Lan17g0389 354 PANTHER RECEPTOR-LIKE KINASE PLANT 19 354 - -
Lan17g0389 354 Gene3D Transferase(Phosphotransferase) domain 1 155 354 - -
Lan17g0389 354 PIRSF ILK 42 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0389 Lan-Chr17 2912823 2915555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0389 3 350 Glycoside Hydrolase AT3G07070 41.899 3.82e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan17g0389 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0389 - K00924 gmx:100305403 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0389 17 2912823 2915555 Lan18g0370 18 6976449 6982980 LSH
Lan17g0389 17 2912823 2915555 Lan6g0942 6 8844342 8847394 PCT
Lan17g0389 17 2912823 2915555 Lan18g0370 18 6976449 6982980 PCT
Lan17g0389 17 2912823 2915555 Lan17g0976 17 13774223 13777773 PCT
Lan6g0942 6 8844342 8847394 Lan17g0389 17 2912823 2915555 PCT
Lan18g0370 18 6976449 6982980 Lan17g0389 17 2912823 2915555 PCT
Lan17g0976 17 13774223 13777773 Lan17g0389 17 2912823 2915555 PCT