Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0380 ATGGTTTGCACTGCCAATGATTTACAGGGATGGAAAGATTTTCCAAAGGGACTTAAGGTTCTTCTCCTTGATGGAGACATAAATTCTGCTGCTGAGACAAAAGCAAAGCTTGAGGCTATGGACTATAATATTTCTTCCTTCTATGATGAGAATGAAGCCTTGTCAGCATGCTCAAGTAGGCCTGAAGACTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGTAGCGAGGGAGGTTTCAAGTTTCTTGAGCATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATCATTGCCTGAGCACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAATTCCTCAATAAACCACTCTCGGAGGACAATCTCAGAAATATCTGGCAGCACGTGGTACATAAGGCATTCAATGCTGGGGCAAGTGTCCTGCCTGAATCACCAAAACCTGTCAGAGAATCTGTAGAATCCATGTTGATAGATGTAGGTAACTTGTCCAAGCTTAGTTATAGTGACCATGAGCATTCAACTGGTAGTGATAAATATCCTGCTCCTTCAACCCCACAATTAAAACAAGGGGAACGATTACTTGATGGTGAGGATTGCCAAGATCAGACAAATTGCTCCACAGAAAAGGAAAGTGGAGAACATGATGGGGACTCTAAATCTGTCGACACTTCATGTGAGAATTTGAACACTGAAAGTATGACCAAACCAATAAAACCTGAAAAGAATCTTATCAAGGGGGAAGAAGATTTTGCTGATGGTTGCAAAGGTGAGATTGCTGTTTCTCTGAATCCAAATAATAGAAAGTTTCTCAGCAAGGCAGGTGGTAATTCTACATCTTCAAATAAAGCGAGTGTTAGAGATTCTTGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGGCACCTGAACTGCACAAAAAGTTTGTGCAGGCAGTCGAACAACTCGGTGTTGATCAAGCTATTCCCTCTAGAATATTGGAGCTAATGAAGGTGGAGGGCTTGACTAGGCATAATGTCGCAAGCCATCTTCAGAAATATAGAATACAAAAGAGACAAATTGTTCCTAGGGACGAAGATCGAAGATGGACAAATCAAAGAGATCAAATGCAAAGGAGCTATTGTGTGCAAAGACCAATTATGGCTTATCCTCCATATCATCCTAACCACACCCTTTCCCCACCTCCTGCATATCCTATGTGGGGACAACCTGGCAGCGAAACAGCTGGCGTTCGGGTTTGGGGCCCTCTCGGTTATCCCCTGTGTCAGCCTTTTCCAACGGTGCATGCGGATGCTTGGGGTTTCCCAGTGTTGCCACCTCCACAAGCTCCCTTTTCCTACACTCATAATATGGTTGGATTTCACAATGCCAAAGCAGTTGATTATAGATTTGACGTGCCACAAAATTCCTTTGAGCATCATCCGGCAGAGGAGGAGGTTGTTGACAAGGTTGTGAAGGAAGCAATGAGCAAGCCATGGCTCCCTCTGCCCTTAGGCCTCAAACCGCCTTCGGCAGATAGTGTGTTGGCCGAGCTTTCTAAGCAAGGCATATCCAACATCACAAAAGATTCAAGTTTATCATGA 1593 0.4401 MVCTANDLQGWKDFPKGLKVLLLDGDINSAAETKAKLEAMDYNISSFYDENEALSACSSRPEDFHVAIVEVSTSSSEGGFKFLEHAKDLPTIMTSNNHCLSTMMKCIALGAVEFLNKPLSEDNLRNIWQHVVHKAFNAGASVLPESPKPVRESVESMLIDVGNLSKLSYSDHEHSTGSDKYPAPSTPQLKQGERLLDGEDCQDQTNCSTEKESGEHDGDSKSVDTSCENLNTESMTKPIKPEKNLIKGEEDFADGCKGEIAVSLNPNNRKFLSKAGGNSTSSNKASVRDSCEIKANRKKMKVDWAPELHKKFVQAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRIQKRQIVPRDEDRRWTNQRDQMQRSYCVQRPIMAYPPYHPNHTLSPPPAYPMWGQPGSETAGVRVWGPLGYPLCQPFPTVHADAWGFPVLPPPQAPFSYTHNMVGFHNAKAVDYRFDVPQNSFEHHPAEEEVVDKVVKEAMSKPWLPLPLGLKPPSADSVLAELSKQGISNITKDSSLS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0380 530 Gene3D - 295 357 - -
Lan17g0380 530 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 528 - -
Lan17g0380 530 SUPERFAMILY Homeodomain-like 298 355 IPR009057 -
Lan17g0380 530 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 299 353 IPR006447 GO:0003677
Lan17g0380 530 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 528 IPR044825 GO:0003700|GO:0045893
Lan17g0380 530 MobiDBLite consensus disorder prediction 193 223 - -
Lan17g0380 530 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Lan17g0380 530 Pfam Myb-like DNA-binding domain 302 351 IPR001005 -
Lan17g0380 530 MobiDBLite consensus disorder prediction 169 236 - -
Lan17g0380 530 Gene3D - 18 139 - -
Lan17g0380 530 SMART REC_2 18 128 IPR001789 GO:0000160
Lan17g0380 530 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 296 355 IPR017930 -
Lan17g0380 530 SUPERFAMILY CheY-like 16 134 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0380 Lan-Chr17 2827162 2836723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0380 1 529 Response Regulator Gene Family AT4G18020 48.768 2.56e-137 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan17g0380 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0380 - - gmx:100779121 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0380 17 2827162 2836723 Lan18g0942 18 14657040 14663483 LSH
Lan17g0380 17 2827162 2836723 Lan6g0311 6 2385255 2391660 LSH
Lan17g0380 17 2827162 2836723 Lan6g0932 6 8712044 8733097 PCT
Lan6g0932 6 8712044 8733097 Lan17g0380 17 2827162 2836723 PCT