Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0374 ATGGGTTGCACGGTGAGGGAAAAACACATCCAAGCCAATCGCAAATCTCGATCGCAGAAACCCAATTGCAATGCTAATTCTCGCTCTAAGTCCATGATGAACCACGTGGATGTGACTCCCAAACAATCTTCTTCAAATTCAAATCCAAATCCTAATCCTAACGATGCTTCATCTGGGTGGGGTTTATGCACCGAGGATCAATTGGAACATATTTTATTGAAAAAAATGGAAATTATATACAATGATGCTGTCTCAAAGCTTGTTGCTTTAGGGTACGAGGAGGATGTAGCCCTAAGAGCGATATTGCAAAATGGTCATTATCACGGTCCAATGGATGTGTTAACAAACATTTTGCACAACACATTGGGTTATTTGAGTAATGATGAATCTGACTCCGAGTCTGAGTCTGAGTCGGAGACTGTGTTCACTGACTTGAAGCAGTTAGTGCGGTATTCGCTAGCTGGTATGGTATCTTTGTTGCAACAATTGAGGCCCAATTTGTGTAAAGGTGATGCCATGTGGTGTTTGCTCATCACTGATTTCCATATAGAAAAGGCAACCAACATTCAAATTCCAGTTTCCGATGACAATGCAGTTGAGACTGGTAGCGGTGATAATTTTAAGAATGTATTTGATGTTATGCCTCCACCTCTATGTAGGTTTCATGGTGGATGGGGGTTTGGAAATGGGGGAACCTCACAGATGACTTTACAGTTACAAAGAGATATTGAATTCCCAAAGAGGTTTAACCTTTCTCCTCAGATGAAGTCCATGTTGAAAAGAAATGTTGCCATGTTCGCTGCTGGTTTTAGGGCCAACTCTAACCAGTTACATCCCAAAGCTGTTCCTCGCAGTAGCTTTGCATCGTCAAGTTTTGAGTCTCCATCTGAGAAGTCTGGTGACTCACACAATCTGAATAATCTAGATGCAGTGAACTCGGTGCTGTTGAGTAAGTTTCGTGATCTAAATCTTGACGAGAAACTGGATTTTGTGGCTGAAGATAAGAAGGGTGAGGTGATAGTCAATCTGTTCCGTCAGATTAAGGATCTTGAGAAACAGGTCAAGGATCGAAAAGAATGGGCTCATCAGAAGGCAATGCAAGCAGCAAGAAAGCTGAGTGGAGATCTCACCGAGCTGAAAATATTAAGGATGGAAAGAGAGGAGACCCAAAGATTGAAGAAAGGGAAGCAGACACTTGAGGGTACAACCATGAAAAGACTCTCAGAGATGGAGAATAACCTGAAAAAGGCTAGTGGTCAAGTGGACCATGCAAATGCTTCTGTCAGAAAACTAGAGATAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTCATGGCATGCCTGCAAATTGCAAAAAGGGAGAAAAATTACTTAAAGAAGCTTCTAGCGTGTGAAAAACAGAAAGCTAAGCTGCAGCAGGAGATTTCTGATGGAAAACAGAAGATATTGGAGATACAAGAAGAATTGGCTCAGATTAAGAAGTGTAAAAAAGAAGCCAAGGTCAAGTTAGGGGAGGAGTTAAAGGCTAAGGAGGAAGCGTTAGCACTAATTGAGGAGGAACGTCATGCTAAGGAAGTAGCTGAGGCTAATCATAAGAGAAATCTTAAAGCTTTACAACTGAACATAGAGATAGATTTCCAGCGCCGCAAGGATGATATCTTAAGGCTTGAGCAGGAGCTGGCACGTCTTAAAGCATCTGCTCATTCTGATAAGCTGCATCATAAATCAAATACTTCACGTGCAGGTGAATCTGAGGGTGCAAAGCTGCCAAGAGAGACAATTGCTATGCTTCTTCAGGACTTGGATAATCTGGAGGATTTTTCAGAAAAAGAAGTCAGCAGTGATAGACAGTGCATTATATGCAACAAAGATGAAGTTTCAATTGTCTTCTTGCCGTGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGAAGAGTATGGGAGAAAGGGCAGAGCTGCTTGTCCATGCTGCTGGGTTCCAATCGAACAGAGAATCCGTGTCTTTGGGGCAAGTTCGTAG 2046 0.4223 MGCTVREKHIQANRKSRSQKPNCNANSRSKSMMNHVDVTPKQSSSNSNPNPNPNDASSGWGLCTEDQLEHILLKKMEIIYNDAVSKLVALGYEEDVALRAILQNGHYHGPMDVLTNILHNTLGYLSNDESDSESESESETVFTDLKQLVRYSLAGMVSLLQQLRPNLCKGDAMWCLLITDFHIEKATNIQIPVSDDNAVETGSGDNFKNVFDVMPPPLCRFHGGWGFGNGGTSQMTLQLQRDIEFPKRFNLSPQMKSMLKRNVAMFAAGFRANSNQLHPKAVPRSSFASSSFESPSEKSGDSHNLNNLDAVNSVLLSKFRDLNLDEKLDFVAEDKKGEVIVNLFRQIKDLEKQVKDRKEWAHQKAMQAARKLSGDLTELKILRMEREETQRLKKGKQTLEGTTMKRLSEMENNLKKASGQVDHANASVRKLEIENAEIKAEMEASKLSASESVMACLQIAKREKNYLKKLLACEKQKAKLQQEISDGKQKILEIQEELAQIKKCKKEAKVKLGEELKAKEEALALIEEERHAKEVAEANHKRNLKALQLNIEIDFQRRKDDILRLEQELARLKASAHSDKLHHKSNTSRAGESEGAKLPRETIAMLLQDLDNLEDFSEKEVSSDRQCIICNKDEVSIVFLPCAHQVMCASCSEEYGRKGRAACPCCWVPIEQRIRVFGASS* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0374 681 MobiDBLite consensus disorder prediction 286 305 - -
Lan17g0374 681 MobiDBLite consensus disorder prediction 576 595 - -
Lan17g0374 681 Pfam Family of unknown function (DUF6592) 75 187 IPR046527 -
Lan17g0374 681 MobiDBLite consensus disorder prediction 1 60 - -
Lan17g0374 681 Coils Coil 407 448 - -
Lan17g0374 681 Pfam Zinc finger, C3HC4 type (RING finger) 624 672 - -
Lan17g0374 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 678 IPR013083 -
Lan17g0374 681 ProSiteProfiles Zinc finger RING-type profile. 627 666 IPR001841 -
Lan17g0374 681 MobiDBLite consensus disorder prediction 16 60 - -
Lan17g0374 681 Coils Coil 463 539 - -
Lan17g0374 681 Coils Coil 555 575 - -
Lan17g0374 681 PANTHER OS05G0141500 PROTEIN 1 680 IPR046934 -
Lan17g0374 681 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 680 - -
Lan17g0374 681 SUPERFAMILY RING/U-box 603 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0374 Lan-Chr17 2772338 2775942 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0374 - - gmx:100777787 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0374 17 2772338 2775942 Lan6g0304 6 2326492 2330108 LSH
Lan17g0374 17 2772338 2775942 Lan17g0990 17 14021724 14034097 PCT
Lan17g0990 17 14021724 14034097 Lan17g0374 17 2772338 2775942 PCT