Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0371 ATGAATTTTGTGGGGATGCTTTTTGATCCCTCACTTACTGTATATAAAAAACCCACTCATCATTCCAAGTTCTCACTCTCATTCAAACTCTCTCTTCTTCTTCCTCTCCACTCTCTCTTTTCTCTCCCTCCATTCCCTACCATGAATTCTCGAGGACAGCCACGTCAGCAGCCTAATGTTATCATGGGACCCACCTCCTACCCCAACACTATTCCGCTTTCCATTATGGGCCCCACCACCGCCCAGTTTCCTTTCACCTCCATGCCCCTCCAACACCACCACCACCAACAACAACAACCGCAGCAGCCACCTGCTCCGGTATCCAACAACAACCCTTCTTTCCAACCCTTCAACATCAACAACAGTGCCACCCCGTACGAGCACGGTTCCTCTACTGCATTGAAGCCGTGCGTGTTAACTGCCACCGACTCCGGCAAGAAGAAGAGGGGACGACCGAAGAAGCATTCATCTGACAGTGATAGCATTGCTTTGGATTTGGCTGCTCCCGCCAAAACTCAGCACGTGTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGCCGCCAGCGCCACGCCCTCCGCTGAGCCTACGGCGAAGAAGCATAGGGGAAGACCACCTGGCTCCGGGAAGAAGCAACTCGGTGCGCTTGGTGCTGCTGCTGGTTTTACTCCTCATATTATTTTGGTGGAGAATGGCGAGGACATTGCAGCAAAAGTTATGTCCTTTTCTCACGGAGGACTTCGGACAGTTTGCATCCTTTCTGCTCACGGTGCAATCAGCAATGTCACTCTTCGACATACAACAATGTCTGGGGATACTGTCACATATGAGGGCCTATTTGAAATCATATCTCTGTCAGGTTCAGCATCTGGAAAGAGTAGTGGTTATAACAAAATGGATGGCTTTAGTGTGTCCCTCGCAGGGCCTGATGGCCGAGTTTTGGGTGGCATAGTTGCTGGAACGCTCACGGCAGCATCACAAGTACAGGTCATTATGGGTAGCTTCATTGCTGAGAGCAAAAAATCTATCTCAAACAACTTGAAATCTAGTTCTGCACCGCCTTCACCCCAAGTGTTAACTTTTGGTGCACCTGCAACTTCAACCAGTCCTACCTCTCAAGGGCCTTCATCTGACTCCTCTGATGACAATGATGATGATCCTTTTAATCGGGGATCTGGCTTCTACAATAATGCTACTCAGACCATTCATAATATGCCATTGTACCGTCCCCAGTTATGGGTTAGCCAAACTCAGCAGTGA 1263 0.498 MNFVGMLFDPSLTVYKKPTHHSKFSLSFKLSLLLPLHSLFSLPPFPTMNSRGQPRQQPNVIMGPTSYPNTIPLSIMGPTTAQFPFTSMPLQHHHHQQQQPQQPPAPVSNNNPSFQPFNINNSATPYEHGSSTALKPCVLTATDSGKKKRGRPKKHSSDSDSIALDLAAPAKTQHVSSPPPPPPPPPPAASATPSAEPTAKKHRGRPPGSGKKQLGALGAAAGFTPHIILVENGEDIAAKVMSFSHGGLRTVCILSAHGAISNVTLRHTTMSGDTVTYEGLFEIISLSGSASGKSSGYNKMDGFSVSLAGPDGRVLGGIVAGTLTAASQVQVIMGSFIAESKKSISNNLKSSSAPPSPQVLTFGAPATSTSPTSQGPSSDSSDDNDDDPFNRGSGFYNNATQTIHNMPLYRPQLWVSQTQQ* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0371 420 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 74 415 IPR039605 GO:0003680
Lan17g0371 420 MobiDBLite consensus disorder prediction 111 129 - -
Lan17g0371 420 MobiDBLite consensus disorder prediction 82 131 - -
Lan17g0371 420 MobiDBLite consensus disorder prediction 82 104 - -
Lan17g0371 420 SUPERFAMILY AF0104/ALDC/Ptd012-like 222 339 - -
Lan17g0371 420 MobiDBLite consensus disorder prediction 346 379 - -
Lan17g0371 420 MobiDBLite consensus disorder prediction 346 399 - -
Lan17g0371 420 MobiDBLite consensus disorder prediction 170 215 - -
Lan17g0371 420 SMART AT_hook_2 146 158 IPR017956 GO:0003677
Lan17g0371 420 SMART AT_hook_2 200 212 IPR017956 GO:0003677
Lan17g0371 420 MobiDBLite consensus disorder prediction 174 192 - -
Lan17g0371 420 CDD DUF296 224 336 IPR005175 -
Lan17g0371 420 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 74 415 - -
Lan17g0371 420 Gene3D - 225 351 - -
Lan17g0371 420 ProSiteProfiles PPC domain profile profile. 219 358 IPR005175 -
Lan17g0371 420 Pfam Plants and Prokaryotes Conserved (PCC) domain 225 336 IPR005175 -
Lan17g0371 420 PRINTS AT-hook-like domain signature 48 58 IPR017956 GO:0003677
Lan17g0371 420 PRINTS AT-hook-like domain signature 144 155 IPR017956 GO:0003677
Lan17g0371 420 PRINTS AT-hook-like domain signature 198 208 IPR017956 GO:0003677
Lan17g0371 420 MobiDBLite consensus disorder prediction 142 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0371 Lan-Chr17 2747777 2752305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0371 146 375 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 45.850 1.70e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0371 - - lang:109331997 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0371 17 2747777 2752305 Lan18g0948 18 14698119 14703414 LSH
Lan17g0371 17 2747777 2752305 Lan6g0303 6 2316984 2321515 LSH
Lan17g0371 17 2747777 2752305 Lan6g0920 6 8596219 8599116 PCT
Lan6g0920 6 8596219 8599116 Lan17g0371 17 2747777 2752305 PCT