Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0370 ATGGCTGGTTTAGATTTAGGTACAGCTTCACGCTTTGTTCAAAATCTCCACAGACCAGACTTCAACTTGCAACAGCAGCAACAACAAACCGAATCAGAAGAAGACGGAAACCAAGGTGACCCATATGAAGATGGACCCCACCAAGGGCTCGAATCCGGTTCCGGGGGTGACGTTGTCACGCGCCGCCCACGTGGTCGACCAGCTGGCTCCAAGAACAAGCCCAAACCTCCGGTGATCATAACAAAGGAAAGCGCTAACACGCTGAGGGCTCATATTCTCGAAGTCGGCAATGGATGCGACGTTTTCGACTGCGTCGCCACCTACGCGCGGCGCCGCCAGCGCGGGATCTGTATCCTCAGTGGTAGCGGCACCATCACCAATGTCAGCTTACGTCAGCCAGCAGCGGCTGGATCCGTCGTCACCCTCCAGGGAAGGTTCGAGATTTTATCACTCTCTGGGTCCTTCCTTCCGCCACCTGCTCCGCCGGGAGCGACGAGCCTAACCATATACCTCGCCGGAGGGCAGGGACAGGTGGTGGGAGGAAGTGTGGTTGGAGAGTTGACCGCAGTGGGGCCTGTGATTGTGATTGCTGCTTCTTTCACCAACGTGGCTTATGAAAGATTACCTTTGGATGAAGAAGAAAACCTTCAGATACAACCACCTGGTCAAGATGGTGGTCACGGTTCTAGTGGCGGTGGAGGGAATAACAACCAGTTTCCGGACCCGTCTTCAGGGCTGCCGTTCTTTAATTTGCCGGTGAATATGCCGAATGTTCAGTTGCCAGTGGATGGGTGGGTGGGAAACTCAGTTGCAGGTTCTTCATTTTGA 828 0.5435 MAGLDLGTASRFVQNLHRPDFNLQQQQQQTESEEDGNQGDPYEDGPHQGLESGSGGDVVTRRPRGRPAGSKNKPKPPVIITKESANTLRAHILEVGNGCDVFDCVATYARRRQRGICILSGSGTITNVSLRQPAAAGSVVTLQGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAVGPVIVIAASFTNVAYERLPLDEEENLQIQPPGQDGGHGSSGGGGNNNQFPDPSSGLPFFNLPVNMPNVQLPVDGWVGNSVAGSSF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0370 275 MobiDBLite consensus disorder prediction 229 244 - -
Lan17g0370 275 MobiDBLite consensus disorder prediction 216 245 - -
Lan17g0370 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 219 - -
Lan17g0370 275 CDD DUF296 89 172 IPR005175 -
Lan17g0370 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 271 IPR014476 GO:0003680
Lan17g0370 275 MobiDBLite consensus disorder prediction 15 35 - -
Lan17g0370 275 ProSiteProfiles PPC domain profile profile. 85 222 IPR005175 -
Lan17g0370 275 MobiDBLite consensus disorder prediction 15 79 - -
Lan17g0370 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 202 IPR005175 -
Lan17g0370 275 Gene3D - 88 221 - -
Lan17g0370 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0370 Lan-Chr17 2738336 2739683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0370 1 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 67.568 4.10e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0370 - - jre:108994023 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0370 17 2738336 2739683 Lan18g0950 18 14710116 14711559 LSH
Lan17g0370 17 2738336 2739683 Lan6g0301 6 2309490 2310744 LSH
Lan17g0370 17 2738336 2739683 Lan17g0993 17 14245770 14247344 PCT
Lan17g0993 17 14245770 14247344 Lan17g0370 17 2738336 2739683 PCT