Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0368 ATGGATTCTTTTGATGATCTCGACTTGGATTATTTCTATGATCAGTGTTTCAACTCCGAAAGCAATCAACAATGTTTCCCAGTTGAATGTCCTGATAGCTCCGTTCAAACATTGAGTCCCTACAATACTTTCACAAGTGGGTTTATGGCTCCTAAGGCTTCTAATTCTGCCTCTCTAACCAGCTCCCAAATTATTTCTTTTCAGTCCTTCAAAGCTCCAGCATTTGCTTCCCATCAAATTTACAACCTAGAAAATTCTGATGTGAAGTCTAAGGTTGCTGCATTTGCTAGGAACACGAGCCAAGCCCAAGGACATGTGGCAGCTGAAAGAAAACGAAGGGAAAAGCTCACCCAGAAGTTCATTGCTCTTTCGGCCATTGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTAGGAGATGCCATCAAGTATGTGAAGCAACTACAAGAACGCGTGCAGACTCTAGAAGATTATGCAGCCCAGAAAAAAACTGAATCAGCATTCTTAGTAAAGAGATCTATTCTCATTGCCGAGGATGATGATGATAGCAACGAATGTTCTCTGAGTAACTGTGACCAACCACTCCCTCATATTGAAGCAAGAGTTTCTGGTAAAGATGTACTCATCAGAATCCACTGCGACAAACATAGTGGCTGTGCTGCAACAATACTTAGCGAGTTAGACAAGTATCATCTCACTGTCCAGGGTAGCAGCTTTTTGCCCTTCGGGAATAACATTCTTGATATAACTATAGTCGCTCAGATGAACCAGGGAAACTGCATGACACCAAAGGATCTCATAGAGAGCCTACGCCAATCTTTGAGAGCGTTCATTTGA 840 0.4262 MDSFDDLDLDYFYDQCFNSESNQQCFPVECPDSSVQTLSPYNTFTSGFMAPKASNSASLTSSQIISFQSFKAPAFASHQIYNLENSDVKSKVAAFARNTSQAQGHVAAERKRREKLTQKFIALSAIVPGLKKMDKASVLGDAIKYVKQLQERVQTLEDYAAQKKTESAFLVKRSILIAEDDDDSNECSLSNCDQPLPHIEARVSGKDVLIRIHCDKHSGCAATILSELDKYHLTVQGSSFLPFGNNILDITIVAQMNQGNCMTPKDLIESLRQSLRAFI* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0368 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Lan17g0368 279 Gene3D - 93 166 IPR036638 GO:0046983
Lan17g0368 279 PANTHER BHLH TRANSCRIPTION FACTOR 85 278 - -
Lan17g0368 279 PANTHER BHLH TRANSCRIPTION FACTOR 16 93 - -
Lan17g0368 279 Coils Coil 146 166 - -
Lan17g0368 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 171 IPR036638 GO:0046983
Lan17g0368 279 CDD bHLH_AtNAI1_like 100 174 - -
Lan17g0368 279 SMART finulus 106 155 IPR011598 GO:0046983
Lan17g0368 279 Pfam Helix-loop-helix DNA-binding domain 104 150 IPR011598 GO:0046983
Lan17g0368 279 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 85 278 - -
Lan17g0368 279 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 16 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0368 Lan-Chr17 2725990 2727861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0368 78 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.000 2.22e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g0368 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0368 - - gmx:100791810 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0368 17 2725990 2727861 Lan6g0296 6 2270166 2272858 LSH
Lan17g0368 17 2725990 2727861 Lan6g0918 6 8567469 8569539 PCT
Lan6g0918 6 8567469 8569539 Lan17g0368 17 2725990 2727861 PCT