Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0363 ATGGGAAGGGGTCCTTGCTGTGACAAAGCCAACGTTAAGAAAGGACCATGGTCATCTGAAGAAGACACCATACTCAAAGCTTATATTGAGCAACAAGGTACTGTTGGCAACTGGATATCCCTGCCCCAGAAGATAGGCCTCAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCGAACATTAAACATGGCGGTTTTTCAGAAGAAGAAAACAACGTAATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCAATTATAGCAGCCCAGTTACCAGGGCGCACAGATAATGACATAAAGAACTACTGGAACACTCGATTGAAGAGGAAGCTCATTGGGAAGCAAAGAAAGCATATGCAAGCTCAAGCTTGTAGAGTCACCAACCTCAAACAAGAGATCAAAAGAGAACCCCAAAATTTTGTGGTGGCTCCTGGAGTTGTCACCCAAACTTCATATTGTCCTTCAGAGCATAATTTTATGTATATGCAAATGGCAAATAATACTGATCAACACTATGATCTCAACAATCAAACATCCTTGAGGAACTTGTTGCTTAACAACAACACCTTCACAGCCACCTTTAGTTCACAATTTGCGTGTGACCTTTCCTTCCAACAAGAACAACAGGTTTATCCAATCACAATGAACATGATAAACCCATTCAATAGTGGCAGTGGAACTTGTCTGCCATCAAATATATCTCAAGGGTTTGAAAACTTCCCAAATGATTTGAGTGAATTTGTCTGTGTGAACCCGCAACCAATAGATGGACCAATGCAAGGCTTTTATGGGATGGAATCCATGGACTTGACAAATAATAATGGTAGCACAAATACCACTTCAACAGAAAGCACTAGTTGGGAAGATATGAACTCTTTGGTTTACTCACCTTTCGTTTCTGACTATGAAGGTTGTCCACAGGGAATTACTCAGGACATCACTTTTGAGGAGTCTAAGTACTTCGGAATTCATATGCAATAA 999 0.4094 MGRGPCCDKANVKKGPWSSEEDTILKAYIEQQGTVGNWISLPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEENNVICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKRKLIGKQRKHMQAQACRVTNLKQEIKREPQNFVVAPGVVTQTSYCPSEHNFMYMQMANNTDQHYDLNNQTSLRNLLLNNNTFTATFSSQFACDLSFQQEQQVYPITMNMINPFNSGSGTCLPSNISQGFENFPNDLSEFVCVNPQPIDGPMQGFYGMESMDLTNNNGSTNTTSTESTSWEDMNSLVYSPFVSDYEGCPQGITQDITFEESKYFGIHMQ* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0363 332 Gene3D - 70 143 - -
Lan17g0363 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan17g0363 332 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan17g0363 332 SMART sant 67 115 IPR001005 -
Lan17g0363 332 SMART sant 13 64 IPR001005 -
Lan17g0363 332 CDD SANT 16 62 IPR001005 -
Lan17g0363 332 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan17g0363 332 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan17g0363 332 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan17g0363 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan17g0363 332 PANTHER OS09G0431300 PROTEIN 1 316 - -
Lan17g0363 332 Gene3D - 7 68 - -
Lan17g0363 332 CDD SANT 73 113 IPR001005 -
Lan17g0363 332 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan17g0363 332 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0363 Lan-Chr17 2678725 2680457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0363 1 302 MYB Transcription Factor Family AT3G49690 46.667 2.63e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan17g0363 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0363 K09422 - gmx:100812816 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0363 17 2678725 2680457 Lan18g0963 18 14789340 14790967 LSH
Lan17g0363 17 2678725 2680457 Lan6g0288 6 2188214 2190118 LSH