Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0361 ATGGCGGAAACAAACGAAAACGTTTCCAAAGAAACCGTAAAGGAATACGAATTTGAAGAGTCGGAGGACCAAAGTTTCGAAGACCTTGGACTAGATGCTCGTCTTGTTCGTGCCCTTCTTAAGAAAGGAATCGATAAATCCACTCCGATTCAGCGCGTCGCAATTCCACTCATATTGGAAGGTAAAGATGTGGTCGCTCGAGCTAAAACGGGTTCTGGAAAGACCTTTGCTTATCTTCTTCCGTTGCTTCAGAAATTGTTTACTAATAATACTGACAGGAAGAAGCTAGCACCCAATGCTTTTATTCTTGTCCCTACTCGCGAATTGTGTCAACAGGTATACAATGAGGTCTCATCAATCCTTGAGTTGTGCAGAGTTCAATTGAAAGTTGTGCAATTGAATAGCAATATGTTGCATTCTGACTTGCGGGCAGCACTCACTGGACCACCGGATGTTTTGATCTCCACACCTACTTGTGTACAAAAGTGCTTGTCTAGTGGAGTACTTCAAGGGGCATCCATTAATAGTTCACTTGAAACTCTAGTCCTCGATGAGGCCGATCTTCTATTATCATATGGATATGAGAATGATATAAAAGCTTTTACACCCCATATTCCCAGAAGTTGTCAGTGTCTTCTTATGTCAGCAACATCAAGTGCTGATGTTGATAAACTGAAGAAGCTGATTCTACACAACCCCTTCATTTTGACTTTGCCTGAAGTGGGAAACCATAAGGATGACATCATCCCTAAAAATGTTGAGCAGTTCTGGATCCCATGTGCTGAGCGTGATAAGTTGCTTTACATCCTTTCTGTCTTGAAACTGGAGTTGGTCCAAAAGAAAGTTTTGATATTCACTAATACCATAGACACGAGTTTCAGATTGAAACTGTTTCTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTGAATGCTGAGTTGCCGCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTATTCGATTATCTAATTGCAGCTGATATTAGCCAGTCAAAGGAGAAGGATGAAGCAACTAAGGAAAATAATGGTGGATCAAGGAAGTCTAGAAAATATGCTAAGCACAAATTAGATTCTGAATTTGGAGTAGTAAGAGGAATTGACTTTAAAAATGTATACACGGTGGTAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCAATCTCTCTGGTTTCTCCAGATGAGATGGATACTTTAGAAGAAATAAGATCTTTTGTTGGGGATGATGAGAACAACGGCTCAAACACCATTGCTGAGTTTCCCCTGCTCACCAAGAATCTGGTTGAATCCTTACGGTATAGGGCTGAGGATGTGGCAAAGAGCGTAACCAAACTTGCTGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAGGCTCATTTTGAATCTAAACCAAGGGAACTAGATCTATTGAAGCATGACAAGCTTTTGAGCAAGAATGCCCCTCCTACGCACCTACGTGGTGTTCCTGACTACCTATTAGATAAAACAACAAAAGAGGCAAAGCAAATGGTTAAGCTTGCAAGGGATGCAATGGGAAATAATAATCATCGCCACCGGGGACCCAAGAGAAAAACTAGAAAAGAAGGCGACCCTTTGAAGGCCATCTCTTCCTCGGTATCAAAAAGAACGCGCAAAGGTGTGTGA 1746 0.4147 MAETNENVSKETVKEYEFEESEDQSFEDLGLDARLVRALLKKGIDKSTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNTDRKKLAPNAFILVPTRELCQQVYNEVSSILELCRVQLKVVQLNSNMLHSDLRAALTGPPDVLISTPTCVQKCLSSGVLQGASINSSLETLVLDEADLLLSYGYENDIKAFTPHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDDIIPKNVEQFWIPCAERDKLLYILSVLKLELVQKKVLIFTNTIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIAADISQSKEKDEATKENNGGSRKSRKYAKHKLDSEFGVVRGIDFKNVYTVVNFEMPQSVAGYVHRIGRTGRAYNSGASISLVSPDEMDTLEEIRSFVGDDENNGSNTIAEFPLLTKNLVESLRYRAEDVAKSVTKLAVRESRAQDLRNEILNSEKLKAHFESKPRELDLLKHDKLLSKNAPPTHLRGVPDYLLDKTTKEAKQMVKLARDAMGNNNHRHRGPKRKTRKEGDPLKAISSSVSKRTRKGV* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0361 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 432 IPR027417 -
Lan17g0361 581 SMART helicmild6 293 407 IPR001650 -
Lan17g0361 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 236 IPR014001 -
Lan17g0361 581 Gene3D - 1 238 IPR027417 -
Lan17g0361 581 CDD SF2_C_DEAD 253 416 - -
Lan17g0361 581 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 12 519 - -
Lan17g0361 581 Pfam DEAD/DEAH box helicase 48 225 IPR011545 GO:0003676|GO:0005524
Lan17g0361 581 SMART ultradead3 43 256 IPR014001 -
Lan17g0361 581 Coils Coil 477 497 - -
Lan17g0361 581 MobiDBLite consensus disorder prediction 542 581 - -
Lan17g0361 581 Gene3D - 242 445 IPR027417 -
Lan17g0361 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 237 IPR027417 -
Lan17g0361 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 453 IPR001650 -
Lan17g0361 581 Pfam Helicase conserved C-terminal domain 264 407 IPR001650 -
Lan17g0361 581 PANTHER RNA HELICASE 12 519 - -
Lan17g0361 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Lan17g0361 581 CDD DEADc_DDX56 31 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0361 Lan-Chr17 2638271 2645873 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0361 25 453 Eukaryotic Initiation Factors Gene Family AT3G19760 25.175 1.35e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0361 K14810 - gmx:100800749 936.791