Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0355 ATGCCCATGTATCAGCCTTGTAAGCGGGACATGGTTGTTGTTGGTTTTGAGGGTGGTGGTGATGGCCAGATTCTAGATCTGGATACTGCAGTCAAAGATGGTGTTTTGGGTGGTGTTGATGGTGTTCTTCTAGGAACTGGGGTTTGTGACAAATTGGATCTGAGAAAATTGATTGAGGAGCTTGACTTATCAGAAATCCCCACTGTCTTCATTTGCCCAATCTCTCTTGAACCAATGCAAGACCCAGTGACCCTTTGCACTGGCCAAACCTATGAAAGGTCCAACATTCTCAAATGGTTCAGTTTGGGACACTTTACATGCCCCACTACTATGCAAGAACTCTGGGATGATTCCATTACTCCAAACACCACCCTTTACCGTTTGATATATACTTGGTTCTCTCAGAAGTACTTGCTTATGAAGAAGAGATCAGAGGATGTGCAAGGAAGAGCTTCAGAGCTTCTTGAAACCCTGAAGAAGGTTAAGGGTCAAGCTAGAGTTCAAGCACTCAAGGAGCTTCACCAAGTTGTGTCTGCTCATTCCACTGCCCGTAAGACCGTGATTGATCAAGGTGGAGTAGCTATTATGTCCTCATTACTTGGTCCTTTTACTTCGCATGCTGTTGGTTCTGAAGTTATTGGTATTCTTGTAAGTTTGACACTTGATTCAGAATCCAAAAAGAATTTAATGCAGCCTGCTAAAATTTCATTAATGGTTGATATATTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACGCGATTGATGGAATCGTTAATTGACGATAAGGATTTTCGTTTAGAGATTATCTCAAGCCATAGCCTCTTGGTTGGGTTGATGAGGCTTGTGAAGGATAAGAGAAGAAGCAATGGAATCTGTTCAGGATTAAGCCTTCTCAAAACAATATCCTTGCATAATGAAGTTAGGAATTTGTTAGTGAGCGTTGGGGCTGTTTCTCAATTGGTTGAATTGTTGTCGGGTTTGGAACCTGATTGTTTGGAATTAGCCCTTTGTGTTTTAGATGCATTGGCTTCTATACCGGAAGGCCGAATTGCTTTGAAAGATTGTTCTAACACCATACCCATCATGGTGAAATTGTTGATGAGGATCTCAGAGAACTGCACCCAATATGCATTGTCAATCCTGTGGTCTGTGTGCAAGCTTGCACCTGAGGAGTGCTCATCCATCGCCGTGGATGCCGGGCTTGCTGCAAAACTTCTCCTTGTTATTCAAAGTGGCTGCAATCCTGTATTGAAACAACAGTCTTCTGAGCTTTTGAAACTGTGTAGTTTAAATTATTCAGACACCATATTCATCTCCAAGTGCAAGCTCACCAGAACCATCCAATGA 1353 0.422 MPMYQPCKRDMVVVGFEGGGDGQILDLDTAVKDGVLGGVDGVLLGTGVCDKLDLRKLIEELDLSEIPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELHQVVSAHSTARKTVIDQGGVAIMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLMESLIDDKDFRLEIISSHSLLVGLMRLVKDKRRSNGICSGLSLLKTISLHNEVRNLLVSVGAVSQLVELLSGLEPDCLELALCVLDALASIPEGRIALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPVLKQQSSELLKLCSLNYSDTIFISKCKLTRTIQ* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0355 450 PANTHER WDSAM1 PROTEIN 40 449 IPR045185 GO:0061630
Lan17g0355 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Lan17g0355 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 40 449 - -
Lan17g0355 450 SUPERFAMILY ARM repeat 153 435 IPR016024 -
Lan17g0355 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Lan17g0355 450 SUPERFAMILY RING/U-box 60 136 - -
Lan17g0355 450 Gene3D - 139 443 IPR011989 -
Lan17g0355 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Lan17g0355 450 SMART arm_5 347 388 IPR000225 GO:0005515
Lan17g0355 450 SMART arm_5 180 218 IPR000225 GO:0005515
Lan17g0355 450 SMART arm_5 306 346 IPR000225 GO:0005515
Lan17g0355 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
Lan17g0355 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0355 Lan-Chr17 2580554 2582967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0355 1 450 U-box Gene Family AT3G49810 73.556 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0355 - - gmx:100779827 775.778