Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0352 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTGAAAGCTGGAGTAGTCAAACACGGAGCAGGAAAATGGCGCACTATACTTACAGACCCAGAATTCAGTTCTGTTTTGCGCATGCGTTCTAACGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCGATATGGGGATCCAGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAGCCTACCACCCCCCAAAATCGACAATATCCATATGTCCTCGAGTATTGTAGTTCACCATGCTGAAGAAGTTGCTGTTACTAAGGCTTCTGCAGTTTCTGGTGGAACATCTTCTACTTCAAAAGAACAAATATCAAGGTTGGATACTCTTATATTAGAGTCTATTTTCAAGTTGAAGGAGCCAAAGGGTTCTGATAGGGCTGCCATTACTGCTTATATAGAGGATCAATACTGCTCTCCACCGAACCTCGAAAAGTTACTATCAACAAAACTGAAGCATATGGTGGCAAGCGGCAAATTAGTGAAGGTAAAGCGTAAGTACATGATTTCAGCAAATCCATCGAGCTCTGAGAAAAGAAGATGCTCTTCCTCTTTATTACTCCTTGAAGGAAGGTCCAAAGATTCTCCTAAAGCAGAGAAGACTAGTGTCAACAACCTTTCAAAATCCCAAATTGATGCGGAGTTATCAAAAATTAAAGGGATGACCGCTCAAGAAGTGGCAAGCGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCTATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCACAAGTTTTTGCAAAGGCAGTAAAGAAGGCATTTAAATGCAAAAAACGTTATCCTTGA 882 0.4376 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSVLRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKSLPPPKIDNIHMSSSIVVHHAEEVAVTKASAVSGGTSSTSKEQISRLDTLILESIFKLKEPKGSDRAAITAYIEDQYCSPPNLEKLLSTKLKHMVASGKLVKVKRKYMISANPSSSEKRRCSSSLLLLEGRSKDSPKAEKTSVNNLSKSQIDAELSKIKGMTAQEVASAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAVKKAFKCKKRYP* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0352 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lan17g0352 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan17g0352 293 Coils Coil 241 278 - -
Lan17g0352 293 Gene3D - 114 194 IPR036388 -
Lan17g0352 293 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan17g0352 293 CDD SANT_TRF 6 57 - -
Lan17g0352 293 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Lan17g0352 293 SMART sant 4 59 IPR001005 -
Lan17g0352 293 Gene3D - 8 88 - -
Lan17g0352 293 PANTHER MYB TRANSCRIPTION FACTOR 1 289 - -
Lan17g0352 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lan17g0352 293 SUPERFAMILY "Winged helix" DNA-binding domain 116 194 IPR036390 -
Lan17g0352 293 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan17g0352 293 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lan17g0352 293 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0352 Lan-Chr17 2547617 2553003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0352 1 291 Single Myb Histone (SMH) Gene Family AT5G67580 54.237 4.53e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan17g0352 Linker_histone 2.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0352 K09422 - gmx:778165 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0352 17 2547617 2553003 Lan18g0971 18 14857174 14861827 LSH