Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0345 ATGGCAAACATGGAGAACAATTGTTGTAAATCTCTCAGCAAGGGCAAGAATTTTACTCCAACACCACCTCCTTTACCTCCATCACCAGTCTTTTGTTTTCCTAAGCTTGTGATGAAGAAGAATTCAGCATCATTAGGGCGCAGCTGTGTCTCTTCAGCCACAAAAGACATGTGGGAACGTCTTTTCAATGAAGGTTATGAAGCTGATATTTGCATTAATACTGAAAACGGTGGCACTATTTATGCTCACTCTAATATTCTTGGCATGGCTTCTCCTGTAATAAGAGGCATGCTGAAGCAAGCTAACCGTCACGACTGTTGGCGATCAATCTCAATCTCCGGGGTTCCACATGATGCTGTTCGGGCTTTTATTCGATTCCTGTACTCTTCCTCTTATGGGAAAGAAGAAATGGAGGAATTCGTCCTACCTTTGTTAGTGTTGTCACATGTATTTGTGGTACCTCACTTGAAGTGCGAGTGTGAGCAGAAGCTAGAGTTGGGTTTACTGACCATAGATAATGTAGCTGATGTATTTCAACTTGCATTACTATGTGATGCTCCGCGACTCAACCTCATTTGTCACCGTATGATACTAAAGAATTTCAAAGCTGTTTCTAAGTCAGAAGGATGGAAAGTAATGAAGCAGAGCCATCCTGCTTTAAAAAAGGAACTCGTTATGTCCATGATGGAAGAACAAAATGCAAAAAGTGAGAGGCACAGAAAAATCAATGATAGGAAGACCTATCTTCAATTATATGAGGCAATGGAAGCTCTTGTTCACATTTGTAGAGATGGTTGTAGAACTATTGGCCCTCGCGATAAAGACTTCAAAGCAAACCAGCCATGTAAATATACAGCCTGCAAGGGACTAGAATTGCTTGTACGTCATTTTGCTGGCTGCAAGGCAAGAGTGCCAGGAGGTTGTGTTCATTGCAAGAGGATGTGGCAGCTTTTGGAGCTACACTCCAGACTTTGTGCCGATCCAGATTTCTGCAGAGTTCCATTGTGCAGGAACTTTAAGAAGAGAATATCATCACAAAGCAAGAAAGAGGAAATTAGATGGAAAATATTGGTTGAAAAGATCTTGAGAACAAAAGGCATTGGAATAGCACCATGCTTTCAGCCACAATAG 1131 0.4156 MANMENNCCKSLSKGKNFTPTPPPLPPSPVFCFPKLVMKKNSASLGRSCVSSATKDMWERLFNEGYEADICINTENGGTIYAHSNILGMASPVIRGMLKQANRHDCWRSISISGVPHDAVRAFIRFLYSSSYGKEEMEEFVLPLLVLSHVFVVPHLKCECEQKLELGLLTIDNVADVFQLALLCDAPRLNLICHRMILKNFKAVSKSEGWKVMKQSHPALKKELVMSMMEEQNAKSERHRKINDRKTYLQLYEAMEALVHICRDGCRTIGPRDKDFKANQPCKYTACKGLELLVRHFAGCKARVPGGCVHCKRMWQLLELHSRLCADPDFCRVPLCRNFKKRISSQSKKEEIRWKILVEKILRTKGIGIAPCFQPQ* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0345 376 SUPERFAMILY POZ domain 49 164 IPR011333 -
Lan17g0345 376 Gene3D Potassium Channel Kv1.1; Chain A 38 168 IPR011333 -
Lan17g0345 376 Pfam TAZ zinc finger 252 336 IPR000197 -
Lan17g0345 376 SMART TAZ_2 245 337 IPR000197 -
Lan17g0345 376 Gene3D - 169 242 - -
Lan17g0345 376 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 5 374 IPR044513 -
Lan17g0345 376 SMART BTB_4 68 168 IPR000210 GO:0005515
Lan17g0345 376 Pfam BTB/POZ domain 60 164 IPR000210 GO:0005515
Lan17g0345 376 CDD BACK 170 211 - -
Lan17g0345 376 Gene3D TAZ domain 243 364 IPR035898 -
Lan17g0345 376 ProSiteProfiles BTB domain profile. 68 136 IPR000210 GO:0005515
Lan17g0345 376 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 5 374 - -
Lan17g0345 376 SUPERFAMILY TAZ domain 244 343 IPR035898 -
Lan17g0345 376 ProSiteProfiles Zinc finger TAZ-type profile. 242 339 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0345 Lan-Chr17 2507756 2512891 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Lan17g0345 BTB 5.8e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0345 - - lja:Lj2g3v1968190.1 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0345 17 2507756 2512891 Lan18g0259 18 3548832 3551841 LSH