Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0325 ATGAACACAGCCATAACCAGAAAAGACATGGATCGGATCAAGGGCCCATGGAGTCCAGAAGAGGACGATTCTCTGCAAAAACTCGTAGAGAAACACGGGCCCAGGAATTGGTCTCTGATCAGCAAATCTATTCCTGGTCGATCTGGCAAGTCTTGTAGGCTCCGCTGGTGCAATCAGCTATCTCCTCAGGTAGAGCATCGGGCTTTCACACCTGAAGAAGACGAAACAATTATCAGAGCCCATGCCCGATTCGGAAACAAATGGGCTACAATAGCCCGACTCCTCTCAGGCCGAACCGACAACGCAATCAAAAACCATTGGAACTCTACCTTAAAGCGTAAGTGTACTTCCTTCATCATTGATGAACCTGACCTTAATCCTCACCCGTTAAAACGTTCTGTTAGTGCCGGTGCTGCTATTCCTGTATCTACTGTACTTTTCATGAACCCTTCCACACCTAGTAGCCCCTCTGGATCCGATGTGAGCGAGTCCAGCGTACCGGTTGCGTCCTCATCACACGTGTATCGACCTGTTCCGAGAACAGGTGGAGTCGTAATGGAAACGACGTCGTCTTCGAATGATCCTCCAACTTCGTTATCGCTTTCTCTTCCTGGTGTGGATTCTTCTTCTGAAGTCTCGAATCGTGCAACGGAGCCTGCTCGTGCCGTTACCTTGCCGGCGCAGTTGAATGTTTTGCCCATGTTAACACCGAGGATGGCGGCGCCGGTGACAACTGTAGCTCCGGTGGCGGTGCAGGAGGAGAATCATGATGTGATGTCGGTGGCGGCGTTTAATTTTAGTGGAGAGTTGTTGACGGTGATGCAGGAAATGATAAGAAAGGAGGTGAGGAGTTTTATGGAGGAAAAGAATGGGATGTGTGAAAATGGGTTTAGGAATGCTTTGGTGAAGCGTATTGGGATAAGTAGAATTGATTCGTAA 939 0.4899 MNTAITRKDMDRIKGPWSPEEDDSLQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCTSFIIDEPDLNPHPLKRSVSAGAAIPVSTVLFMNPSTPSSPSGSDVSESSVPVASSSHVYRPVPRTGGVVMETTSSSNDPPTSLSLSLPGVDSSSEVSNRATEPARAVTLPAQLNVLPMLTPRMAAPVTTVAPVAVQEENHDVMSVAAFNFSGELLTVMQEMIRKEVRSFMEEKNGMCENGFRNALVKRIGISRIDS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0325 312 Gene3D - 13 65 - -
Lan17g0325 312 PANTHER MYB PROTEIN-RELATED 5 283 - -
Lan17g0325 312 MobiDBLite consensus disorder prediction 151 171 - -
Lan17g0325 312 SMART sant 65 113 IPR001005 -
Lan17g0325 312 SMART sant 13 62 IPR001005 -
Lan17g0325 312 Gene3D - 67 124 - -
Lan17g0325 312 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Lan17g0325 312 Pfam Myb-like DNA-binding domain 17 75 - -
Lan17g0325 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Lan17g0325 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Lan17g0325 312 CDD SANT 68 111 IPR001005 -
Lan17g0325 312 MobiDBLite consensus disorder prediction 151 219 - -
Lan17g0325 312 MobiDBLite consensus disorder prediction 7 22 - -
Lan17g0325 312 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lan17g0325 312 MobiDBLite consensus disorder prediction 1 22 - -
Lan17g0325 312 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 5 283 - -
Lan17g0325 312 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Lan17g0325 312 MobiDBLite consensus disorder prediction 184 217 - -
Lan17g0325 312 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0325 Lan-Chr17 2383075 2384686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0325 6 311 MYB Transcription Factor Family AT4G37260 50.592 9.79e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan17g0325 Myb_DNA-bind_6 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0325 K09422 - gmx:780556 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0325 17 2383075 2384686 Lan6g1443 6 19903101 19904220 LSH
Lan6g1443 6 19903101 19904220 Lan17g0325 17 2383075 2384686 PCT