Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0319 ATGAACGGTGAAAGTGGCGGTGGAGGAGAGAGAGAGATGGGTACGAAGAAGAGAGGAGGGATAGAGAGTGGTGTGAGAAGGTATAAAGGAATAAGGATGAGAAAGTGGGGAAAGTGGGTTGCTGAGATTAGGGAACCAAACAAGCGTTCAAGGATTTGGCTCGGTTCTTATTCTACTCCCGTCGCGGCGGCGCGTGCTTACGACACTGCCGTTTTCTATCTCCGTGGACCTTCAGCTCGCCTCAACTTCCCCGACCTTCTAACGGGCGATAACGGCGCCGTTATTTCCAACTGTGATATGTCAGCAGCTTTCATCAGAAAGAAAGCAACCGAGGTCGGTGCCAGAGTCGATGCCTTACAAGCCACCTGCCGCCACAACCATGTGGCGGCGGTGCCGGAGTTTTCGGAGCGGGTTGATCTGAACAAGATACCCGAACCGGAAGATTCGGAGAGTGAGTGGGATATGAATTAG 471 0.5265 MNGESGGGGEREMGTKKRGGIESGVRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLTGDNGAVISNCDMSAAFIRKKATEVGARVDALQATCRHNHVAAVPEFSERVDLNKIPEPEDSESEWDMN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0319 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 9 150 - -
Lan17g0319 156 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 9 150 - -
Lan17g0319 156 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Lan17g0319 156 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Lan17g0319 156 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Lan17g0319 156 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Lan17g0319 156 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Lan17g0319 156 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Lan17g0319 156 CDD AP2 27 86 IPR001471 GO:0003700|GO:0006355
Lan17g0319 156 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0319 Lan-Chr17 2340267 2341020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0319 13 154 AP2-EREBP Transcription Factor Family AT2G23340 58.182 5.10e-55 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan17g0319 AP2 9.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0319 K09286 - gmx:100527066 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0319 17 2340267 2341020 Lan18g1000 18 15047343 15048245 LSH
Lan17g0319 17 2340267 2341020 Lan6g0114 6 788926 789915 LSH