Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0317 ATGTGGGATCTGAATGATTCCCCTGATCAGAGATATGATAACAAAGGCAAAGGGGTTGGATCTGTTTCCAATTCAAGTTCATCTGCAGTGGTAATAGAAGATGATGGATCAGATGAAGAGTTGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCATGATGGTGGTGGTGGTGATGATGATGAGTCCATGGATAGTGACAACTTACCCGTGACTCAACAGTTTTTCCCGGTGGAGGAGGAGTCTGAGGTGACAGTACCCTCCGGTGACGGTGGCAGTTCTTCAAACTTCCCTCGAGCTCACTGGGTAGGAGTAAAATTTTGTCAATCAGAAGGACTTGGTGGTGGAAAATCAGTGGAAATGTCTCAGCCCATGAAGAAAAGTAGAAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTTACCTTTTACAGAAGAACTGGTCGATGGGAATCACATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCGATAAAATTTAGGGGAGTAGAGGCAGACATAAACTTCAACATAGAAGATTATGAAGAGGATTTGAAACAGATGAGTAATTTAACGAAGGAGGAGTTTGTGCACGTACTTCGGCGACAAAGTACTGGATTTCCGAGAGGAAGTTCCAAATATAGAGGTGTAACTCTGCACAAGTGTGGAAGATGGGAAGCAAGAATGGGACAATTTTTAGGCAAAAAGTACGTTTATCTGGGTCTTTTTGACACCGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACAAATTTTGACCCCAGCATCTATGATAATGAGCTTAACTCTGAATCCTCAGGGACCGTTGCAGATCACAATTTGGATTTAAGTTTGGGCAATTCGAGCTCTAAGCACAGCAATAATCAAGCATCAGGGAATCACACCCCAAATGTTGCAACTTATCACACCCCAAAGCTTGTGAACATACTGCCAAAACTATGTGGTAAAAGCAACATGGATGGGCACGGAACTCATCTTCAATCTCCAGCCTCCAATAATGAAATGCAAATACATGGTCCTTTGAGTTCATCTGGAGAACCTCACAATTTTGCACATCATCTTCACCCACCAAATTTTTATTTTCCCAGCAGCAGCAATGGAGTGCGTATAGAAAGTGATCTTTCATTATCAATGAACAATCAACAAAAATGGCAATCAGGGCCTCCACTATTTGTAGCAACTGCTGCAGCATCATCAGGATTCTCACCTCAGATAAGACCCTCCCAAGCTTGGGTGCAGAAAAATGGCTTCTACAATCTCATGAAACCTCCTTAA 1383 0.4324 MWDLNDSPDQRYDNKGKGVGSVSNSSSSAVVIEDDGSDEELKKRSSKIFGFSVTHDGGGGDDDESMDSDNLPVTQQFFPVEEESEVTVPSGDGGSSSNFPRAHWVGVKFCQSEGLGGGKSVEMSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESSGTVADHNLDLSLGNSSSKHSNNQASGNHTPNVATYHTPKLVNILPKLCGKSNMDGHGTHLQSPASNNEMQIHGPLSSSGEPHNFAHHLHPPNFYFPSSSNGVRIESDLSLSMNNQQKWQSGPPLFVATAAASSGFSPQIRPSQAWVQKNGFYNLMKPP* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0317 460 CDD AP2 140 197 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 Gene3D AP2/ERF domain 231 290 IPR036955 GO:0003700|GO:0006355
Lan17g0317 460 Gene3D AP2/ERF domain 139 198 IPR036955 GO:0003700|GO:0006355
Lan17g0317 460 MobiDBLite consensus disorder prediction 17 32 - -
Lan17g0317 460 CDD AP2 231 291 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 MobiDBLite consensus disorder prediction 116 140 - -
Lan17g0317 460 MobiDBLite consensus disorder prediction 357 379 - -
Lan17g0317 460 ProSiteProfiles AP2/ERF domain profile. 140 196 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Lan17g0317 460 SUPERFAMILY DNA-binding domain 231 291 IPR016177 GO:0003677
Lan17g0317 460 SMART rav1_2 232 295 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 SMART rav1_2 140 202 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 Pfam AP2 domain 231 280 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 Pfam AP2 domain 140 188 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 MobiDBLite consensus disorder prediction 354 386 - -
Lan17g0317 460 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 PRINTS Ethylene responsive element binding protein signature 271 291 IPR001471 GO:0003700|GO:0006355
Lan17g0317 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 360 458 - -
Lan17g0317 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 337 - -
Lan17g0317 460 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 7 337 - -
Lan17g0317 460 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 360 458 - -
Lan17g0317 460 MobiDBLite consensus disorder prediction 1 71 - -
Lan17g0317 460 MobiDBLite consensus disorder prediction 304 335 - -
Lan17g0317 460 ProSiteProfiles AP2/ERF domain profile. 232 289 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0317 Lan-Chr17 2326430 2330092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0317 1 459 AP2-EREBP Transcription Factor Family AT4G36920 56.275 5.26e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan17g0317 AP2 7.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0317 K09284 - gmx:100786333 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0317 17 2326430 2330092 Lan6g0116 6 802488 805843 LSH