Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0316 ATGCAGATGCTTGGATTGACTGAAAATGAGATTTTGAAGTACATAAAGCTTGAGACTTTCCAATCTGTCACTGATGGCACTCCACAAACTGAACTTTGTTGCATTTGCCAGGATAATTATTCGAAAGGAGAAAAACTTGGGATACTAGACTGCATGCACAAATTTCATCTAGATTGCATTAAACAGTGGCTGCTGACTGAGAACACATGCCCATTATGCAAACAAATAGGACTAAATATACCTATTGATGAAGAGGATCAAAATGAAGGTGGAGTTGGAGTTGCAGGTGAAGTTGGAGTTGCAGGTGAAGGTGAAGTTGGAGTTGCAGGTGAAGCTGAAGTTCGAGTTGCAGGTGAAGCTGAAGCTGAAGCTGAAGCTCGCAATGAATGA 390 0.4128 MQMLGLTENEILKYIKLETFQSVTDGTPQTELCCICQDNYSKGEKLGILDCMHKFHLDCIKQWLLTENTCPLCKQIGLNIPIDEEDQNEGGVGVAGEVGVAGEGEVGVAGEAEVRVAGEAEAEAEARNE* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0316 129 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Lan17g0316 129 SMART ring_2 33 73 IPR001841 -
Lan17g0316 129 SUPERFAMILY RING/U-box 26 77 - -
Lan17g0316 129 Pfam Ring finger domain 33 74 IPR001841 -
Lan17g0316 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 78 IPR045191 GO:0061630
Lan17g0316 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 77 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0316 Lan-Chr17 2292296 2293737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0316 5 81 C3H Transcription Factor Family AT2G15530 44.444 1.00e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0316 - K22753 lang:109331094 191.43