Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0315 ATGGCGGATAGTGATGATGATATGAATATCTACAACTATGACAAGAACCTTTCTACCTCACACGATGAAATCTCCATTTTCCTGCGTCAGATTCTTCTACGTTCATCATCTTCTTCTTCTTCTTCACACGTCAACAACTCCAACTTCATGTTACCTGAACCTTTCAGCTCCAACCATGATGGCAACAAGATCTTCACCGTTGGAGCTGGAGGAACCACTAATTCAATGCCCACTCACGTTTCCATCAAGGGTCAACAAGGAGTGAGTGAGAATGATACTGATGAGTATGATTGTGAAAGTGAGGAGGGTGTTGAAGCATTTCCAGAAGAAGTTCCAACAAAATCGGTTCCTTCTAGGGGTTCTTCAAAAAGAAGCAGAGCAGCAGAAGTTCATAATTTGTCCGAAAAGCGAAGAAGGAGTAGAATCAATGAGAAAATGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCTATCGATTACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTATCGATGAGAAATGGATTAAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAATTGTCTCGGATGAGTATGGAATTGGGTGAAGAAAACAGGTCAATCCCTTTGAACATGGCAGCTACCTTGCCTATGCACCAAAGGAACACCTTAAACTATGCATCATCTAATATACCTAACCAACACACCTTTCCTAATCAGCCATCAGTGCCTTATCCTTCATATGTTAACAACTCAGAAGCTTCTTTTGGCCTGGAATCCCCAATCCTATCACATATAAAACCTTTTCAGCCTACAAGACCTTCTCAGATATGCAGGGAAGACATATTGCAGCACCAGCAATCAAATGCAGGCCATTCAGATACCAATCTTTTAGTCGGTTCTCAAGCTATCAAAGAATTAAAGTCAGGGACAACTGATGTATCACCATCCTTCGACATGCAAACATCCGAAGCTAAGGACGATAGCTCTTTCCAAACATGCATTGCTGGAAGAGAACAATCTGGAGTGATCATGACAAATAGTGAGCCCAACAATATTCTCGCATCGCAGTTAAGTAGGTAG 1113 0.4169 MADSDDDMNIYNYDKNLSTSHDEISIFLRQILLRSSSSSSSSHVNNSNFMLPEPFSSNHDGNKIFTVGAGGTTNSMPTHVSIKGQQGVSENDTDEYDCESEEGVEAFPEEVPTKSVPSRGSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQLSRMSMELGEENRSIPLNMAATLPMHQRNTLNYASSNIPNQHTFPNQPSVPYPSYVNNSEASFGLESPILSHIKPFQPTRPSQICREDILQHQQSNAGHSDTNLLVGSQAIKELKSGTTDVSPSFDMQTSEAKDDSSFQTCIAGREQSGVIMTNSEPNNILASQLSR* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0315 370 MobiDBLite consensus disorder prediction 103 138 - -
Lan17g0315 370 Gene3D - 121 185 IPR036638 GO:0046983
Lan17g0315 370 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 18 306 IPR031066 -
Lan17g0315 370 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983
Lan17g0315 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Lan17g0315 370 MobiDBLite consensus disorder prediction 124 138 - -
Lan17g0315 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 186 IPR036638 GO:0046983
Lan17g0315 370 PANTHER TRANSCRIPTION FACTOR SPATULA 18 306 - -
Lan17g0315 370 SMART finulus 132 181 IPR011598 GO:0046983
Lan17g0315 370 CDD bHLH_AtPIF_like 126 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0315 Lan-Chr17 2281981 2285300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0315 91 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.754 5.49e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g0315 HLH 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0315 - - var:108334706 380.178