Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0312 ATGACGGATGAAGAGTCTCCAACCACCGGCACCGGCACCGGGAGGCGAAGGACCAGAGGACCAGAGGCCTCCGCCCGAAGCGAAGCCCTAGAACGCCTCAAAGCCCGTCTCCGCGGCGGCCGCAGATCTGATGACGGCGGACCCCAAATCAGGTTAGAAAACCCTATTTATGACACTGTCCCTGAGGACGAGTATAACGCGCTCGTCGCCAAGCGCCGCGAACAAGCGCAATCGTTTATCGTCGATGATGACGGTCTTGGTTACGGTGACGAAGGTGAAGAAGAGGATTGGTCAAAAGCTGGATTCACACTCTCTGATGAATCAGACGGTGAATTGGAGAAACCGAAGAGGAAGAAAGTTGAAAAGAAAGATCCTCACACGAAACGAGCTTCTGCTTCTTCTGCTTCGCTTTCCGCTGCTGCATCCATTATGGGCGCGAATAGGTTATCGTCGATGTTCACTTCATCGGTTTTTAAGAAGAGAGATGATAAGTCATGTGACAGCATCGTTGATGATGTGATCGCGGAGTTTGCGCCAGATGAGAATGATAGACAAAGGCGTAGAAGGGTGCAATTGAGTTCGGTTTCAACTGAATCTGGTGCCAGTGAAGCATTAAGGATTAACAGTGGTTTCAGTGAGAAACCGTCGATTGGCAACTCTCCCGATTCCATTAGAGGTTATACTGTTCCAAATCTTGACGTGGAATCAGTTAGGGCTGTTAAGATTACTAATAGTTCTGACTTAGGTTTAGAGAAAAAATATGACACCCTTAAAGAAAATGTATCCTCTGTTGAGGATGGAAAAGATTGTAGTTCTGAAAATGGTGAATCATCAATTGAGCAAGTACAACCTAATGGAGATTTAGTTGAGGAGAAGGCTGCGAAGGAAATTGAAGTAGAAAGGAAACCGGCTATAAAAAACGAGGTGTTTACTCTGAATGCAAAGGTTAGTAAGGAAGCTGACCATGGATTGAGTGCAACTGCAGACTGGAAAGCATTGAAGAGTGGTGGAGTTGAGAACATTGTTACTGATTCGAAAGTGGCGAGGGAAGCTTCAAATGCCGAACAGCACTCAGAGTTTTATCTCGATAAAGATGGATTACTGCCTTTCTATTTACTAGATGCATACGAGGAGTTTAAAGGAGCCAACGCAGGCACAGTTTATTTGTTTGGGAAGGTCAAAGCTGGGAACATGTATCAGAGTTGCTGTGTTATTGCGAAAAATATTCATAGATGTGTCTATGCAATTCCAACTCATCCTTTACATTACACTGATGAGATGATAAAGCTTGAGAAAGATGTCCAAGAATCTCAAATTTCTTTAGCAGATTTCAATAAAAACTTACAAGATGCAGTATCTGGTTTAAAGAACGAGATAGCCAAACATCTTTTGGATCTGAACGTGTCAACCTTTACCATGGCACCTGTGAAGAGAAAGTATGCATTTGAACATTCTGAAATTCCTGCTGGTGAAAACTATGTGGTGAAAATCAATTATCCATTCAAGGATCCAGAACTTCCAGTAAACCTCAGAGGAGAAAGTTTCTGTGCCCTTTTAGGAACTCAATGCAGTGCACTGGAGCTTCTTTTGATTAAAAGGAAGATAAAGGGGCCTTCATGGCTACATATTTCAAACTTTTCTACCCCCACAGCTTCTCAAAGGGTTAGTTGGTGCAAGTCTGAAGTGATTGTAAGCTCTCCTAAAGACATAAAGATCCCAGCTTCCTCAAAAACCCCTCCCGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACCACCATAAATGAAAAACAGGACATAAATGAGATTGTATCTGCATCCATTGTCAGCTGCAACAGGGTTAAGATTGATACCCCAATGTTGGCTTCAGAGTGGAAGAAAGCTGAAATGCTGACCCATTTTACTGTGGTCCGAAAACTTGATGGGACTATATTTCCACTGGGGTTCAGTAAGGAGGTCACAGACAGGAACACAAAAGCTAGGTCAAATGTTCTTTTTGTTGAAAGCAGCGAAAGAGCTTTGTTAAACCGTCTGATGATAGAGCTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTTGATGTTCTTCTCCACAGATCCCAGGCTTTGAAGGTACCACCCAGGTTCTGGTCTAAACTAGGTCGCCTCAATCGTTCTGTCATGCCTAAGCTTGACAGAAAATACAAGGGTTCTGGAGCTAGTCATGGTATCATGTCCTGCATTGCTGGCCGGCTTCTTTGTGATACATACTTGTCATCCCGTGAGCTATTAAAGGAGGTTAGCTATTCTTTAACTCAACTAGCAAAAACACAACTGAACATGGTCCGGAGGGAAGTTGCTCCACACGACATTCCAAAGAAGTTCCAATCAGCAGAATCCTTAATGGAGCTTATTGAATATGGTGAGACAGATGCCGTGTTGTCTATGGAACTCATGTTTCATTTATGTATTCTTCCTCTCACACGTCATCTGACTAATATAAGTGGTAACATGTGGGGGAGAACTCTTCAGGGTGCACGAGCACAGAGAGTGGAGTATCTTTTGTTGCATGCTTTCCATGCAAAAAAATATATTGTGCCAGACAAGGTCTCAGTCTATGCAAAAGAAACAAAATTGACAAAACGCAGAGCACCTAATGGTGTTGATGATGGTAACTTTGATGAAGCAGATATTGATGATGCGAACTATGATAATGTTGCTGGCAACGGTGATAATAAGAAAAGCAAAAAGACTTCTTCCTATGCTGGGGGATTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAGTATAACATCTGCTTCACAACTGTTGAAAGATCTTCAGATGGATCTTTTCCTCGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAGAAATCTGGTTGAAAGGAGGAGAATGGTAAAGTCATGGATGAAGAAAGAATCAGGTCTTAAACTCCAGCAATTGGACATTCAGCAGCAAGCACTGAAACTTACTGCAAACAGTATGTATGGATGCCTGGGCTTTTCCAATTCAAGATTTTATGCAAAACCACTAGCCGAGCTTATTACCCTACAAGGAAGGGAAATACTGCAGAGCACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTTATCTATGGTGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAATCAAAAGCAATGGCTGGAAAAGTTATTCAAGAAGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTATACAAGAGAATGCTACTACTTAAGAAAAAGAAATACGCAGCCGTAAAGGTGCAGTTCAAAAATGGCACCCCATATGAGGTTATTGAGCGTAAAGGTCTTGATATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAAGTAGGAGACTTTTGCTTGAGTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTTGTTGAATCAATACACAACTATCTCATGAAGGTGCAAGAAGAAATGAGGACAGGTGATGTACCACTGGAAAAATATGTCATCACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCTAAAAATCAACCACATGTTCTTGTGGCACAAAGATTGAAGCAACAGGGTTACTCTTCTGGTTGCTCTGTTAATGATACCATCCCTTACATAATTTGCAATGAGCAGGGAGGTAGTTCAGGCAGTGCAACGGGCATTGCTCAGCGTGCCAGACATCCTGATGAACTTAAACAAGAACAAGAGAAATGGATGATTGACATCGAGTACTACTTGTCACAACAGATTCATCCTGTTGTATCACGTCTTTGTGCATCAATTCAGGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTTTAAGTGATGATCCTACAAGCTCACTCTTGTTTTCTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCTTTCGTCTTGTCATGCCCCAGCTGCTCTGGTACTTTTGACTGCCCACCTGTCTTCAAATCCATTTGTTTGTTAGGAAGTGGAAAGCCAACCAGCCCAGGCATGGAGGATTCCAACTACAATTTCTGGCATAAACTGCACTGTTCTAAATGCCCAGAAGAGGGCGGTGCTGGCAGAATTTCACCTGCAATGTTAGCTAATCAGGTCAAAAGGCAAGCAGAGAAGTTTGTTTCACTGTACTATAAAGGTTTACTAATGTGTGATGATGAAACCTGTAAGCATACAACTCGAAGTATCAACCTTCGGTTGGTGGGTGATTCAGAAAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCATCTCCATAGAAAGTACACTGAAGCAGACTTGTACAAACAACTATCATATTTTTGCCATGTGCTGGACACTGTTTCCGGTATAGAAAAGATGGAGACTAAATCTAGGATACAGGTGGAGAAAGAGTTGATGAAACTTAGGCCGGTGGTTGATATGGCAGCATCAACGATACAGAAGATCAGGGACCGTTGTGCCTATGGATGGGTGAAGCTACAGGACCTAGTCATTACAGATTAA 4659 0.4215 MTDEESPTTGTGTGRRRTRGPEASARSEALERLKARLRGGRRSDDGGPQIRLENPIYDTVPEDEYNALVAKRREQAQSFIVDDDGLGYGDEGEEEDWSKAGFTLSDESDGELEKPKRKKVEKKDPHTKRASASSASLSAAASIMGANRLSSMFTSSVFKKRDDKSCDSIVDDVIAEFAPDENDRQRRRRVQLSSVSTESGASEALRINSGFSEKPSIGNSPDSIRGYTVPNLDVESVRAVKITNSSDLGLEKKYDTLKENVSSVEDGKDCSSENGESSIEQVQPNGDLVEEKAAKEIEVERKPAIKNEVFTLNAKVSKEADHGLSATADWKALKSGGVENIVTDSKVAREASNAEQHSEFYLDKDGLLPFYLLDAYEEFKGANAGTVYLFGKVKAGNMYQSCCVIAKNIHRCVYAIPTHPLHYTDEMIKLEKDVQESQISLADFNKNLQDAVSGLKNEIAKHLLDLNVSTFTMAPVKRKYAFEHSEIPAGENYVVKINYPFKDPELPVNLRGESFCALLGTQCSALELLLIKRKIKGPSWLHISNFSTPTASQRVSWCKSEVIVSSPKDIKIPASSKTPPEIPPVVVTAINLKTTINEKQDINEIVSASIVSCNRVKIDTPMLASEWKKAEMLTHFTVVRKLDGTIFPLGFSKEVTDRNTKARSNVLFVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRSQALKVPPRFWSKLGRLNRSVMPKLDRKYKGSGASHGIMSCIAGRLLCDTYLSSRELLKEVSYSLTQLAKTQLNMVRREVAPHDIPKKFQSAESLMELIEYGETDAVLSMELMFHLCILPLTRHLTNISGNMWGRTLQGARAQRVEYLLLHAFHAKKYIVPDKVSVYAKETKLTKRRAPNGVDDGNFDEADIDDANYDNVAGNGDNKKSKKTSSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKTTGVLPELLRNLVERRRMVKSWMKKESGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKSKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKNGTPYEVIERKGLDIVRRDWSLLAKEVGDFCLSQILSGGSCEDVVESIHNYLMKVQEEMRTGDVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVNDTIPYIICNEQGGSSGSATGIAQRARHPDELKQEQEKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEALSDDPTSSLLFSADDEERYRGCEPFVLSCPSCSGTFDCPPVFKSICLLGSGKPTSPGMEDSNYNFWHKLHCSKCPEEGGAGRISPAMLANQVKRQAEKFVSLYYKGLLMCDDETCKHTTRSINLRLVGDSERGTVCPNYPRCNGHLHRKYTEADLYKQLSYFCHVLDTVSGIEKMETKSRIQVEKELMKLRPVVDMAASTIQKIRDRCAYGWVKLQDLVITD* 1553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0312 1552 Gene3D Palm domain of DNA polymerase 911 1134 IPR023211 -
Lan17g0312 1552 Gene3D DNA Polymerase alpha, zinc finger 1342 1538 IPR038256 -
Lan17g0312 1552 Gene3D - 826 871 - -
Lan17g0312 1552 Pfam DNA polymerase family B, exonuclease domain 400 774 IPR006133 -
Lan17g0312 1552 Gene3D Helix hairpin bin 979 1030 - -
Lan17g0312 1552 Gene3D - 583 825 IPR036397 GO:0003676
Lan17g0312 1552 Coils Coil 427 465 - -
Lan17g0312 1552 CDD DNA_polB_alpha_exo 583 831 - -
Lan17g0312 1552 Pfam DNA polymerase family B 840 1303 IPR006134 GO:0000166|GO:0003677
Lan17g0312 1552 MobiDBLite consensus disorder prediction 264 283 - -
Lan17g0312 1552 Gene3D - 410 536 - -
Lan17g0312 1552 Gene3D - 1147 1333 IPR042087 -
Lan17g0312 1552 MobiDBLite consensus disorder prediction 1 15 - -
Lan17g0312 1552 Gene3D - 370 569 - -
Lan17g0312 1552 MobiDBLite consensus disorder prediction 79 137 - -
Lan17g0312 1552 CDD POLBc_alpha 916 1319 IPR045846 GO:0003887|GO:1902975
Lan17g0312 1552 SUPERFAMILY Ribonuclease H-like 364 869 IPR012337 -
Lan17g0312 1552 ProSitePatterns DNA polymerase family B signature. 1071 1079 IPR017964 GO:0000166|GO:0003676
Lan17g0312 1552 SUPERFAMILY DNA/RNA polymerases 865 1319 IPR043502 -
Lan17g0312 1552 SMART polmehr3 583 1083 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan17g0312 1552 MobiDBLite consensus disorder prediction 19 48 - -
Lan17g0312 1552 Coils Coil 1097 1117 - -
Lan17g0312 1552 TIGRFAM pol2: DNA polymerase (pol2) 56 1301 - -
Lan17g0312 1552 MobiDBLite consensus disorder prediction 1 58 - -
Lan17g0312 1552 MobiDBLite consensus disorder prediction 92 129 - -
Lan17g0312 1552 MobiDBLite consensus disorder prediction 182 202 - -
Lan17g0312 1552 Pfam DNA Polymerase alpha zinc finger 1343 1548 IPR015088 GO:0003887|GO:0006260
Lan17g0312 1552 Pfam DNA polymerase alpha subunit p180 N terminal 30 97 IPR024647 -
Lan17g0312 1552 PRINTS DNA-directed DNA-polymerase family B signature 940 953 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan17g0312 1552 PRINTS DNA-directed DNA-polymerase family B signature 1016 1028 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan17g0312 1552 PRINTS DNA-directed DNA-polymerase family B signature 1069 1077 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lan17g0312 1552 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0312 Lan-Chr17 2258175 2270597 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0312 11 1550 Core DNA Replication Machinery Family AT5G67100 60.293 0.0 1816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0312 K02320 - gmx:100798779 2163.65