Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0310 ATGGATTTGGATATACTGAAAACTTCAGCTAGTGACTGCAACAGTATGGACATGATGGCAATGATGATGCAAACGGATAAGTTCCCACCTCATGAATTATTAAGTGACCCTTTTTATAACACTACTACTCTAACCTACCCAGAAAACGATTACTTCTCTGGTGCAATAAACTCAAATGTTGCACCACCACCAACATCTTCTAATTTTGGTAACAATCCTCTAATGACTACACCATCCTTTATCCCAAACCATTCATTTCCATCTGAGAAAAAGAATTCAATGGCGGCAATGAGAGAAATGATATTCCGAATGGCGGTGATGCAACCTATTCAGATAGACCCAGAATCTGTGAAGCCACCAAAGAGAAGGAACGTGAAGATTTCAAAGGACCCGCAGAGTGTGGCAGCGAGACACAGGAGGGAAAGAATAAGCGAGAAGATAAGGATACTTCAGAGAATAGTGCCTGGTGGAACCAAAATGGACACAGCTTCTATGTTAGATGAAGCCATACATTATGTGAAGTTCTTGAAGAAACAAGTGAAGACTCTTGAACAGGCAGGGGCAAGTAGAGCTGTTAATGTTGTTGGCCTCCCAATGTGCAACACCGATTTGAATTTGAATTATTCTGCTTTAGTGAAGGGTTGTAAACCTTGTTAA 657 0.4079 MDLDILKTSASDCNSMDMMAMMMQTDKFPPHELLSDPFYNTTTLTYPENDYFSGAINSNVAPPPTSSNFGNNPLMTTPSFIPNHSFPSEKKNSMAAMREMIFRMAVMQPIQIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRIVPGGTKMDTASMLDEAIHYVKFLKKQVKTLEQAGASRAVNVVGLPMCNTDLNLNYSALVKGCKPC* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0310 218 Pfam Helix-loop-helix DNA-binding domain 137 176 IPR011598 GO:0046983
Lan17g0310 218 CDD bHLH_AtIND_like 128 184 - -
Lan17g0310 218 Coils Coil 166 186 - -
Lan17g0310 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 80 216 IPR045843 GO:0003700|GO:0006355
Lan17g0310 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Lan17g0310 218 Gene3D - 126 194 IPR036638 GO:0046983
Lan17g0310 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 186 IPR036638 GO:0046983
Lan17g0310 218 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 80 216 - -
Lan17g0310 218 SMART finulus 133 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0310 Lan-Chr17 2248183 2249446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0310 12 185 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 52.821 1.13e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan17g0310 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0310 - - lang:109330746 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0310 17 2248183 2249446 Lan6g1412 6 18670128 18671293 LSH