Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0296 ATGTCATCATCGAATTCACCGTGCGCTGCGTGCAAGTTTCTGCGGCGGAAGTGCACACAAGAATGCGTGTTCGCGCCATATTTTCCACCGGACAACCCTCAAAGATTCGCGTACGTGCACAAGGTTTTCGGCGCCAGCAACGTGGCAAAGATTCTCAACGAACTTACCGCGGCGCAGCGAGAGGATGCCGTTAAGTCCCTCGCTTACGAAGCGGAGGCGCGTCTCCGTGACCCCGTTTATGGGTGCGTGGGTCTCATATCTGTTCTCCAACACAGGCTCAGGCAGATCCAAATGGAGCTTAATAATGCTAAGAAGGAACTTGCTACTTATATTGGACCCCAGGGCTTGCCCACCACCGCCATTCTTCAACAACACCCTTCTGCTGCCGCATACCCGTTTACCTCCTCCGTCTTTCCTGTCACCACCGCTGCTCACGGTGGTCAGTTGTTGCTTGGCGAGCCTCAGCATCCACAACATCAGATCTTGGAGGCTCAGCAATTGGCTGCGGCTATGGCTGCAAGAGAGCAGCAAGAGATGTTTAGGGGTTTTGAGCATCAACAACAACAGCAGCAACCAGAGTTTCTGAGGTTCAACGGTGGTGGGTTCGATTTGGATTCAGTTTCAGGTGGTGGATTTAGCCAGCAGGTTTCACCAGCTGCACCTGTTTCTGATGATCAGTTATCTCCTTCATTGACTTTGGGGTCCTTTGAGAACCCTTTTCATCATATGCAGCAACCACAGCAAGGAGAACCTCATGCTCATGTTCATTCTCATCATCTTCCGCTTGAGGCACAGCTACTTCTCTCATCACCACACCAGGAAAAGCAGGAGCAGCAGCAACAAACCCAGCAGTCACAATTGCAACATCACCAGCAACAGTTGGAAAGGGATGAGTGTAGGAGTGTGGGTCCATCTTGTTGA 921 0.5157 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKILNELTAAQREDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQMELNNAKKELATYIGPQGLPTTAILQQHPSAAAYPFTSSVFPVTTAAHGGQLLLGEPQHPQHQILEAQQLAAAMAAREQQEMFRGFEHQQQQQQPEFLRFNGGGFDLDSVSGGGFSQQVSPAAPVSDDQLSPSLTLGSFENPFHHMQQPQQGEPHAHVHSHHLPLEAQLLLSSPHQEKQEQQQQTQQSQLQHHQQQLERDECRSVGPSC* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0296 306 MobiDBLite consensus disorder prediction 269 290 - -
Lan17g0296 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 266 - -
Lan17g0296 306 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lan17g0296 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 266 - -
Lan17g0296 306 MobiDBLite consensus disorder prediction 206 306 - -
Lan17g0296 306 Coils Coil 86 106 - -
Lan17g0296 306 Coils Coil 273 293 - -
Lan17g0296 306 MobiDBLite consensus disorder prediction 208 245 - -
Lan17g0296 306 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0296 Lan-Chr17 2064028 2068000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0296 1 227 AS2 family AT5G66870 56.098 2.85e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lan17g0296 LOB 1.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0296 - - gmx:100816778 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0296 17 2064028 2068000 Lan18g1017 18 15223718 15226264 LSH
Lan17g0296 17 2064028 2068000 Lan6g0129 6 924934 926815 LSH