Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0272 ATGGGTTGGTTTACTAAGTTGCTTAAGGGCGCCAACCATAAAATTCTACGAGGACAGTACCATGGCAAATATTATGAAGAGAACAGAATTTGGGATAACCATTGCACCTCTGTGGATGATTTGACAGATGTTGAGAAAGAAGACCTAGACCGTGCAATTGCACTCTCTCTGACAGAGGAGGACCAGAAAGGGAAAAAAATTGTTGAGGATGACTCACAATCTGAAGAAGATTTACAGCTTTGCAATATTGAAGAGGAGGAAGATGAACATCTTGGTAAAGTTCAACCAGTGGAGGATGAACATGTTGGCAAAGTTCAACTAGAGGAAGATGAACATATTGGTAAAGTTCAACAAGAGGAAGATAAACATATTGGTAAAGTTCAACAAGATGAAGATGAACATCTTGCTAAAATTCAACTTGAGGAAGATGAGCAATTGGCCAGGGCAATTCAAGAAAGTATGAATATCGGTCTTCCTTCTCATTATGACAATGATTCGTTACTTAAACCTATTCCAAATCTCTTTTCAACTGGATACAGACCCTGTGCTGGATGCCACACTGAGATTGGCCATGGAAGATTTTTAAGTTGCATAGGAGCCATCTGGCATCCAGAATGTTTCCGCTGCCATGCTTGCAATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCCTGCTATAAGAAGCAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCAGCTGGTCTAATTGAGTATAGAGCTCACCCTTTCTGGATGCAAAAGTACTGCCCATCACATGAGCGAGATGGCACTCCTCGCTGTTGTAGCTGCGAAAGAATGGAGCCAAAGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTCTAGAGTGTCTGGACTCTGCAATTATGGATACACATGAATGCCAGCCACTCTACCTTGAAATACAAGAATTTTATGAAGGGTTAAATATGAAAGTGGAGCAGCAAATTCCTATGCTTTTGGTGGAGAGACAAGCACTGAATGAGGCCATGGTGGGAGAAAATAATGGTCATCACCACTTACCTGAAACTAGAGGACTATGCTTGTCTGAAGAGCAAACTGTCACCACTATTTTAAGGCGACCAAGCATCGGGGCAGGCTACCGGATGGTTGACATGATAACTGAGCCTTATAGGCTGACCCGCCGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGATGTTGACAGGATCAATCCTAGCTCACGAAATGATGCATGCATGGCTCAGGCTTAAAGGTTATCATAATCTGAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTATTGGCTCATATGTGGTTAGATTCAGAGATCTATTCTGTATCTGGGAATGATGGTGCACCATCGTCGTCTTCATCTTCTTCATCATCATCGCCTTCTTCCTCCTCTTCGTCATCAAAGAAAGGTAAACGGTCCGACTTCGATAAAAAACTCGGTGACTTCTTCAAACACCAGATTGAGTCAGATACCTCTTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAGGCAGTGCTCAAATATGGTCTCAAAAGGACCCTTGACCATATTCAAATGACAGGAAGTTTCCCTTGA 1656 0.4215 MGWFTKLLKGANHKILRGQYHGKYYEENRIWDNHCTSVDDLTDVEKEDLDRAIALSLTEEDQKGKKIVEDDSQSEEDLQLCNIEEEEDEHLGKVQPVEDEHVGKVQLEEDEHIGKVQQEEDKHIGKVQQDEDEHLAKIQLEEDEQLARAIQESMNIGLPSHYDNDSLLKPIPNLFSTGYRPCAGCHTEIGHGRFLSCIGAIWHPECFRCHACNLPITDYEFSMSSNRPYHKSCYKKQHHPRCDVCKNFIPTNSAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMEPKDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMVGENNGHHHLPETRGLCLSEEQTVTTILRRPSIGAGYRMVDMITEPYRLTRRCEVTAILVLYGLPRMLTGSILAHEMMHAWLRLKGYHNLSPEVEEGICQVLAHMWLDSEIYSVSGNDGAPSSSSSSSSSSPSSSSSSSKKGKRSDFDKKLGDFFKHQIESDTSSAYGDGFRLGNQAVLKYGLKRTLDHIQMTGSFP* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0272 551 CDD LIM_DA1 182 234 - -
Lan17g0272 551 ProSitePatterns LIM zinc-binding domain signature. 182 216 IPR001781 -
Lan17g0272 551 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 263 - -
Lan17g0272 551 MobiDBLite consensus disorder prediction 471 500 - -
Lan17g0272 551 PANTHER PROTEIN DA1-RELATED 2 1 121 IPR045218 -
Lan17g0272 551 PANTHER PROTEIN DA1-RELATED 2 108 551 IPR045218 -
Lan17g0272 551 SMART lim_4 181 233 IPR001781 -
Lan17g0272 551 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 121 - -
Lan17g0272 551 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 108 551 - -
Lan17g0272 551 Pfam LIM domain 182 237 IPR001781 -
Lan17g0272 551 MobiDBLite consensus disorder prediction 471 494 - -
Lan17g0272 551 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 174 207 - -
Lan17g0272 551 Pfam Protein DA1 331 547 IPR022087 -
Lan17g0272 551 SMART uim 44 63 IPR003903 -
Lan17g0272 551 SMART uim 141 160 IPR003903 -
Lan17g0272 551 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 141 154 IPR003903 -
Lan17g0272 551 ProSiteProfiles LIM domain profile. 180 240 IPR001781 -
Lan17g0272 551 Gene3D Cysteine Rich Protein 173 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0272 Lan-Chr17 1861055 1867544 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan17g0272 DA1-like 3.7e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0272 - - gmx:100817969 910.983