Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0261 ATGAATCATCTTAATATTGAAGACCATATCATGCTCACGTCTCAGCTATATTCTGCAGGTCCATATACTCAAATAGTACCTCAACAAGGGGAGTACAAGAAGCCAAGACGGAGGCGTAATAAAAAGTGCAGAGGAGGAGAAAGTGGAGCTTTGGACGCACACAAAAAGAGAAAACTGAGTGATGAGCAAGTTAATATGCTTGAGCAAAGTTTTGGTAATGAACATAAACTTGAGTCTGAAAGGAAGGACAAGCTTGCAATGGAGCTTGGTTTAGATCCTCGTCAAGTGGCTGTGTGGTTTCAAAACAGGAGAGCTCGTTGGAAGAATAAGAAATTGGAGGAAGAATACTCAACCCTCAAGAAAGCACATGAAGCCACCACCCTTGAGAAATGCCTTCTTGAAACTGAGGTGCTGAAGCTCAAAGAACAACTATCAGAGGCTGAGAAAGAAATTCAGATACTAAAACATACTGATAGAGTCTCTAGCAACAGTCCCAGTTCATCACAGCAGTCTCAGTCAATGGAGGCGGTAGTGGACCCACCATTTTTTGGAGAGTTTCAAGTTGATGGATATGATGATGATGTTTTTTACGTGCCAGAGACCCATTACATCAATGGCATGGAATGGATTAATTTGTACATTTGA 645 0.414 MNHLNIEDHIMLTSQLYSAGPYTQIVPQQGEYKKPRRRRNKKCRGGESGALDAHKKRKLSDEQVNMLEQSFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHEATTLEKCLLETEVLKLKEQLSEAEKEIQILKHTDRVSSNSPSSSQQSQSMEAVVDPPFFGEFQVDGYDDDVFYVPETHYINGMEWINLYI* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0261 214 MobiDBLite consensus disorder prediction 27 57 - -
Lan17g0261 214 CDD homeodomain 55 111 IPR001356 GO:0003677
Lan17g0261 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 213 - -
Lan17g0261 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 213 IPR045224 GO:0003700
Lan17g0261 214 MobiDBLite consensus disorder prediction 157 174 - -
Lan17g0261 214 Coils Coil 102 129 - -
Lan17g0261 214 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Lan17g0261 214 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Lan17g0261 214 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Lan17g0261 214 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Lan17g0261 214 SUPERFAMILY Homeodomain-like 54 119 IPR009057 -
Lan17g0261 214 MobiDBLite consensus disorder prediction 155 174 - -
Lan17g0261 214 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Lan17g0261 214 Gene3D - 46 117 - -
Lan17g0261 214 SMART HOX_1 53 114 IPR001356 GO:0003677
Lan17g0261 214 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0261 Lan-Chr17 1793642 1795509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0261 1 214 Homeobox Transcription Factor Family AT2G18550 54.222 9.23e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lan17g0261 Homeodomain 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0261 K09338 - gmx:100809616 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0261 17 1793642 1795509 Lan18g1039 18 15577920 15589020 LSH
Lan17g0261 17 1793642 1795509 Lan6g0158 6 1141563 1142654 LSH