Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0250 ATGTCTTCTCCTGATAACTCATCACCTGATAACTCGACACCTGATAATGCTACACCCGATAACAGTACCCCTGATGATGCTGACAACTCATCATCGCCACCATCATCATCACAATCACCACCATCACCACCATCACAACCACCACCATCTGAACCATCTCCATCACCACCACCACCCGAAAAAGATTCCTCACCCCCTCCAACACCACCCTCATCCAATAATTCTCCCCCACCACCATCATCATCAGACAATCCACCACCATCATCAAACAATCCACCCCCACCATCATCATCAAATAATCCAACTCCACCTCCTCCAGCATCATCAGGCCGTTCTCCACCCTCACCTTCTGGTGGATCACCATCACCACCACAACACAAACCATTGCCGAGTAATAATAATGATAATAACAACAAAACACCATCCGCTCCAAAGTCTGGTAATGATAATGACAATAGCGACAAGGCAATTATTGGGGCAGTGCTTGGTGTAGGAGCCGTTCTTCTGATTCTGGTTATCGTTTGTGTTATTTGCTCCAGGAGGAAGAAGAAAAGAAAACAAATGTACTATTATGGAGAACAAGATGCAAAAGGGAATAATCACTATTACAATAATAGTGGTCAGCATCCAGTTGGTTATTATGGAGGTCCACGCCATCCGGACCATGTTGTCGGGGTCCAAAGTGGAATGGCTCCTCCTAATAGTGGTTGGGGTGCACCACCTCCGCTAATGATGAACAGTGCTGAAATGAGCTCCAGTTTCTCAACGGGACCGCCTCCTCTGCCTCCTCCTTCACCAAATCTTGCACTAGGCCTCAAGGGTACCTTCTCTTATGAAGAATTAGCAGCTGCTACCAATGCATTTAATGATCAGAATTTAATAGGACAAGGGGGCTTCGGTTATGTCCACAAAGGGGTGTTGCCGAATGGAAAGGAGATTGCGGTTAAGAGCTTGAAAGCAGGTAGTGGGCAAGGAGAGCGAGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGTATTGCTGGTGGACAAAGAATGTTGGTCTATGAATTTATTCCCAATAACAATTTAGAACATCACCTTCATGGAAAAGGTGTGCCTACCATGGATTGGCCTACTAGAATGCGAATCGCAATAGGATCAGCGAAAGGGCTTGCCTATCTTCACGAAGACTGTCATCCACGCATAATTCATCGTGATATCAAAACTGCAAATGTCCTCATTGATGACAGTTTCGAAGCGAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTTCTGACAATAATACACATGTATCCACTCGTGTCATGGGAACTTTCGGGTACCTTGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCCGATGTTTTCTCATTTGGTGTAATGCTATTGGAACTCATATCTGGGAAGCGACCTGTAGACCTCACAAACACCATGGAGGACAGCTTAGTGGACTGGGCTCGGCCACTACTGACTCGTGGACTGGAGGAGGATCCTGGAAACTTCAGGGAGCTGGTCGATCCATTTTTGGAGGGAATCTACAATCCTCATGAAATGTCAAGGATGGCTGCTTGTGCTGCTGGCAGCATTCGCCACTCTGCCAGAAAGCGCCTAAAAATGAGCCAGATCGTGAGAGCGTTAGAAGGAGATGTCTCACTAGACGACTTGAAGGAGGGGATGATGAAGACAGGGATTACAAATGTTCAAACAACCTCTTCATCTAGCTCAGATATGCCATATGATACAATGCAATACAATCATGATATGCAAAAGATGCGACATATGGTGTATTCGGGCGAGGCAGGCACTAGCAGTGGCTCTAGCGCCGAAATGAGTCGAATTCAAGAAACCCCAAGGAGGCTGAACTAA 1914 0.4603 MSSPDNSSPDNSTPDNATPDNSTPDDADNSSSPPSSSQSPPSPPSQPPPSEPSPSPPPPEKDSSPPPTPPSSNNSPPPPSSSDNPPPSSNNPPPPSSSNNPTPPPPASSGRSPPSPSGGSPSPPQHKPLPSNNNDNNNKTPSAPKSGNDNDNSDKAIIGAVLGVGAVLLILVIVCVICSRRKKKRKQMYYYGEQDAKGNNHYYNNSGQHPVGYYGGPRHPDHVVGVQSGMAPPNSGWGAPPPLMMNSAEMSSSFSTGPPPLPPPSPNLALGLKGTFSYEELAAATNAFNDQNLIGQGGFGYVHKGVLPNGKEIAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNNNLEHHLHGKGVPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKTANVLIDDSFEAKVADFGLAKLTSDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELISGKRPVDLTNTMEDSLVDWARPLLTRGLEEDPGNFRELVDPFLEGIYNPHEMSRMAACAAGSIRHSARKRLKMSQIVRALEGDVSLDDLKEGMMKTGITNVQTTSSSSSDMPYDTMQYNHDMQKMRHMVYSGEAGTSSGSSAEMSRIQETPRRLN* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0250 637 SMART serkin_6 288 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0250 637 SUPERFAMILY Protein kinase-like (PK-like) 262 562 IPR011009 -
Lan17g0250 637 ProSiteProfiles Protein kinase domain profile. 288 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan17g0250 637 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Lan17g0250 637 PRINTS Proline rich extensin signature 12 24 - -
Lan17g0250 637 PRINTS Proline rich extensin signature 36 57 - -
Lan17g0250 637 PRINTS Proline rich extensin signature 63 79 - -
Lan17g0250 637 PRINTS Proline rich extensin signature 82 99 - -
Lan17g0250 637 MobiDBLite consensus disorder prediction 1 35 - -
Lan17g0250 637 MobiDBLite consensus disorder prediction 36 128 - -
Lan17g0250 637 Gene3D Transferase(Phosphotransferase) domain 1 364 578 - -
Lan17g0250 637 Pfam Protein tyrosine and serine/threonine kinase 292 490 IPR001245 GO:0004672|GO:0006468
Lan17g0250 637 PANTHER RECEPTOR-LIKE KINASE 66 627 - -
Lan17g0250 637 Gene3D Phosphorylase Kinase; domain 1 268 363 - -
Lan17g0250 637 MobiDBLite consensus disorder prediction 129 151 - -
Lan17g0250 637 MobiDBLite consensus disorder prediction 1 151 - -
Lan17g0250 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Lan17g0250 637 MobiDBLite consensus disorder prediction 614 637 - -
Lan17g0250 637 MobiDBLite consensus disorder prediction 615 630 - -
Lan17g0250 637 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 66 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0250 Lan-Chr17 1725879 1730553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0250 98 637 Trihelix Transcription Factor Family AT1G70460 44.964 6.32e-148 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lan17g0250 PK_Tyr_Ser-Thr 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0250 - - lang:109332805 855.129