Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0249 ATGGATGCAATGAAGAACGAAGAGCCCGTTGATTCACCGACTTCGGTTCTCGGAGACGAGGACGCTTGTGGTGCGGAGGTTGAGATTAAGGCTGAAGAAGAGGTGCTTTTAGATATTATAGATGATGGATCCTTGCTTTTACCAAAATCAATTGCTGAGGAGGAAGAGAAATTGATCAAAGAACGGGCAAAGGAAGAAGAGGAACAGTGTGAGGAAGCACCCGACCTCAATGAGACTCAGTTTAATAAATTGGATGAGCTTTTAACACAGACTAAACTCTACTCTGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTAATGGGGGTGAAAAAGAGAATGGAGATGAGCAAGAGAGTGAGCCAGCTACAAAGAAGAAAGGCCGTAAAAGAAAAGCAGCTTCACAATGCAATACTGGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTCACAAGATCTAAAGAAAGTGTGAAGACTGAAGATATGAACATGAGTGAGGAGGACAGAATTGCGAAAGAGCAGAAGGAGCTTATGCCTTTACTGACCGGTGGAAAATTGAAATCTTATCAGTTGAAGGGTGTCAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCAGATCAAATGGGTCTGGGGAAGACAATCCAAACAATTGGATTTCTTGCACATTTAAAAGGGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTTTATCAACCCTCTCAAATTGGGTGAATGAGATTTCTAGGTTTGCTCCATCACTCCCTGCTGTTATCTATCACGGGGACAAGAAACAGAGAGATGAAATCCGAAGGAAACTTATGCCTAGAAAAGTTGGCCCAAAATTTCCCATTGTTATCACTTCTTATGAGGTTGCTTTAAGTGATGCTAGAAAATGTTTCATGTCATACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCGAAATGCAAATTAGTGAAGGCATTGAAATGCTTAAATGTAGAAAATAAGCTTCTTCTATCTGGGACTCCTCTTCAGAATAACTTGGCGGAGTTATGGTCATTGTTGAACTTCCTTTTACCTGATATTTTCTCATCTCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAATGCAATAATGGAGCAACCAAGGAAGAACTTGAAGAGAAAAGAAGAGCCCAAGTAGTAGCAAAGCTCCATGCCATACTTCGACCCTTTCTTCTGCGCAGGATGAAGACTGATGTTGAGCTGATGTTGCCACGGAAGAAGGAAATTATTTTATATGCAACCATGACTGAGCATCAGAAGAAATTGCAGGATCATTTAATCAATAAGACAATGGAGAAGTATTTAGAAGAAAAATCATCAACTGGGCGTGCCACCAAATCAATTAAAAATTTGTGTCTTCAACTTAGGAAGGTCTGCAATCATCCTGACCTTTTAGAGTCAGCCTTTGATGGTTCTTATTTGTATCCTCCTATAAATGAGATAGTTGACCAATGCGGAAAATTCCATTTGCTCAAGCGGTTGTTGGAACAGTTGTTTGCACGGAAGCACAAAGTTCTGATTTTCAGTCAGTGGACTAAGGTGTTAGATTTAATGGACTATTATTTTAGCGAGAAGGGCTTTGAAGTTTGCAGGATTGATGGTAGTGTGAAACTGGATGACAGGAAACGGCAGATTGAGAACTTCGATGATCCAAACAGCAAATACAGGATCTTTCTTCTCTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCTGCTGACACTTGCATTCTTTATGACAGTGACTGGAACCCCCAGATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGTCAGACAAAGCCTGTTCATGTTTACAGGCTCTCAACTGCGCAATCTATAGAGGTTCGCATGTTGAAAAGAGCTTTCAACAAGTTGAAGCTTGAGCATGTGGTGATTGGGAAAGGACAGTTTCATCAAGAACGTGCAAAGCCTGTCAGTGCCGACGAATTGGAGGAAGAGGATGTCTTGGCATTGCTTCGGGATGAAGAAACAGCTGAAGACAAGATGATACAAACAGGTATTAGGGATGAAGACCTGATTAAGGTGTTGGATCGCAGTGATCTTGTTGTCCCCAATTCAAAGGATGACAAAGACTTCAAAGCTCCGGTCAGTTCGTTTCCCCTTAATGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCGTCAGGGGGCATGCTTTCTACTCTTAACAGTTAA 2268 0.4193 MDAMKNEEPVDSPTSVLGDEDACGAEVEIKAEEEVLLDIIDDGSLLLPKSIAEEEEKLIKERAKEEEEQCEEAPDLNETQFNKLDELLTQTKLYSEFLLEKMDDITLNGGEKENGDEQESEPATKKKGRKRKAASQCNTGKAKRAVAAMLTRSKESVKTEDMNMSEEDRIAKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDEIRRKLMPRKVGPKFPIVITSYEVALSDARKCFMSYNWKYLVVDEGHRLKNSKCKLVKALKCLNVENKLLLSGTPLQNNLAELWSLLNFLLPDIFSSLEEFESWFNLSGKCNNGATKEELEEKRRAQVVAKLHAILRPFLLRRMKTDVELMLPRKKEIILYATMTEHQKKLQDHLINKTMEKYLEEKSSTGRATKSIKNLCLQLRKVCNHPDLLESAFDGSYLYPPINEIVDQCGKFHLLKRLLEQLFARKHKVLIFSQWTKVLDLMDYYFSEKGFEVCRIDGSVKLDDRKRQIENFDDPNSKYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEVRMLKRAFNKLKLEHVVIGKGQFHQERAKPVSADELEEEDVLALLRDEETAEDKMIQTGIRDEDLIKVLDRSDLVVPNSKDDKDFKAPVSSFPLNGPGWEVVIPTASGGMLSTLNS* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0249 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 198 366 IPR014001 -
Lan17g0249 755 SMART ultradead3 182 377 IPR014001 -
Lan17g0249 755 Pfam Helicase conserved C-terminal domain 511 622 IPR001650 -
Lan17g0249 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 676 IPR001650 -
Lan17g0249 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 416 IPR027417 -
Lan17g0249 755 Pfam SNF2-related domain 189 486 IPR000330 GO:0005524|GO:0140658
Lan17g0249 755 Gene3D - 422 723 IPR027417 -
Lan17g0249 755 Gene3D - 150 415 IPR038718 -
Lan17g0249 755 SMART helicmild6 538 622 IPR001650 -
Lan17g0249 755 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 9 754 - -
Lan17g0249 755 Coils Coil 49 73 - -
Lan17g0249 755 MobiDBLite consensus disorder prediction 108 140 - -
Lan17g0249 755 MobiDBLite consensus disorder prediction 1 21 - -
Lan17g0249 755 PANTHER SNF2/RAD54 HELICASE FAMILY 9 754 - -
Lan17g0249 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 696 IPR027417 -
Lan17g0249 755 CDD SF2_C_SNF 498 632 - -
Lan17g0249 755 MobiDBLite consensus disorder prediction 108 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0249 Lan-Chr17 1718915 1724776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0249 238 684 RAD5 or RAD16-like Gene Family AT5G05130 25.182 1.79e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan17g0249 SNF2_N 2.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0249 K19001 - gmx:100777687 1184.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0249 17 1718915 1724776 Lan6g0167 6 1197574 1205166 LSH