Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0243 ATGATGCACCGTTCTTGCAATGACTCATATCAGGGACACGTGATGGGACACTGCACATGTGGTATGTTCCATAGCCAAACAAGTTCATTCTCTATGCTATTCTCCATGCCAAACCACAAACCCTATGACTATGATCAGCATGAGCCTGATATGTGTTCCTACAATGCTACTCCCTCTTCATCTAATGTGGACTGCACCCTCTCACTTGGAACCCCTTCTACACGTTTCACAGAAGATGAAGAGAAGAGAAGCTGTCGACCCGTTTCAAATTTTTGTTGGGATTTAGTACAACCCAACCACAGCACTCAGTCACAAACCAAGTCCAGGAAAGATAGCAGTAGTAACAATACCAATGACTCTCTCCTTCCTCGTCGCTGCGCCAACTGCGACACTACTTCAACACCTCTTTGGAGGAATGGACCTCAAGGCCCAAAGTCACTCTGTAATGCCTGTGGGATAAGATTCAAGAAAGAAGAGAGAAGAGCGAGTGCTGCTGCCACGCCCACGGCGGCGTCCGGCGGTGTAGTGGACTCATCGCAGATGTACAGCCACCATAACAACTCATGGTACGCACACTCGCAGAGCCAGAAGATGCAGTGCCTCTCGCCGGCGATGGGGAACGATTTCCGGTTCATGGATGACGGGGATCAAGATTCCGATAATGGCATTCCCTTTCTGTCTTGGAGACTTAACGTCACAGACAGAACAAACTTCGTTCACGACTTTACATGA 732 0.4863 MMHRSCNDSYQGHVMGHCTCGMFHSQTSSFSMLFSMPNHKPYDYDQHEPDMCSYNATPSSSNVDCTLSLGTPSTRFTEDEEKRSCRPVSNFCWDLVQPNHSTQSQTKSRKDSSSNNTNDSLLPRRCANCDTTSTPLWRNGPQGPKSLCNACGIRFKKEERRASAAATPTAASGGVVDSSQMYSHHNNSWYAHSQSQKMQCLSPAMGNDFRFMDDGDQDSDNGIPFLSWRLNVTDRTNFVHDFT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0243 243 Pfam GATA zinc finger 126 160 IPR000679 GO:0006355|GO:0043565
Lan17g0243 243 ProSiteProfiles GATA-type zinc finger domain profile. 124 156 IPR000679 GO:0006355|GO:0043565
Lan17g0243 243 CDD ZnF_GATA 125 157 IPR000679 GO:0006355|GO:0043565
Lan17g0243 243 MobiDBLite consensus disorder prediction 99 119 - -
Lan17g0243 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 161 - -
Lan17g0243 243 Gene3D - 122 197 IPR013088 GO:0006355|GO:0008270
Lan17g0243 243 PANTHER GATA TRANSCRIPTION FACTOR 18 1 243 - -
Lan17g0243 243 ProSitePatterns GATA-type zinc finger domain. 126 151 IPR000679 GO:0006355|GO:0043565
Lan17g0243 243 PANTHER GATA TRANSCRIPTION FACTOR 18 1 243 IPR044272 GO:0003700|GO:0009908
Lan17g0243 243 SMART GATA_3 120 172 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0243 Lan-Chr17 1658954 1660714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0243 19 243 C2C2-Gata Transcription Factor Family AT3G50870 42.955 2.33e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan17g0243 GATA 4.3e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0243 - - gmx:100790571 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0243 17 1658954 1660714 Lan18g1047 18 15649591 15651782 LSH
Lan17g0243 17 1658954 1660714 Lan6g0171 6 1257233 1258904 LSH