Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0240 ATGAGAGGCCAAGAAGACAAGGAAATAGAGATGCCAACCACTTTAGGTTACAATAGAGATTCTTCATCTTCTTCTTCCAAGTTGTCTTCTCCAACTGCAGGTGAAACAAGTGTTCATCATCAACCTTTTCCTGCTTCTCAAACTCCCACATTAATCTTCAATGATCAACCTCAAACTTCACACCAAGCAACCACTCAACTTCATCAATCTCAGGAACCAAGTACAGATCCAGATCTAAGCTCATTTCCTGTTGTCACAACAAGCATAACAATCACCCCAATTGCCAGCATACCAATCCCACCAAGAACAGCCCCACCACAAACAACTATAACCGCAATCGCAACCACAACCGCATTGATCAGATACCGTGAATGTCTGAGGAACCACGCAGCCAGCATGGGGAGCCATGTGGTAGATGGATGTGGAGAATTCATGCCAAGTGGAGAAGAAGGCACCCCAGAATCACTAAAGTGTGCTGCTTGTGATTGCCACCGCAATTTCCACCGGAAAGAAACTGAAGGGGAACCTCAACAACATGCTTCTAATTATCACAGCTATCACCCTAACAAGCACAACAACACTCACAATATAATACCTTCTCCTCCTCTTCCTCATCATAATCATTCTCATCTCCAGTTTCATACACCATCCTCTTCTATGCATCATAGATTCTCTCATGGGGTTGCCAACCCTACAAGTCTGATTCCGCCAATGATAGCCTTTGGAGGCGGTGGTGGCGGTGCCGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCTAATAGAGGAGGAGAGATATTAATGCAGCCGCCATCAATGTCAAAGAAGAGGTTCAGGACAAAGTTCACACAGCAACAAAAGGAAAGGATGATGGAGTTTGCTGAGAAGCTTGGGTGGAAGATCCAGAAACAAGATGAGCAAGAAGTGCAACAATTCTGTTCTCAGGTTGGTGTCAGAAGACAGGTATTCAAGGTTTGGATACACAATAACAAGCAAGCTATGAAGAAACAACAAATGTAA 1023 0.4418 MRGQEDKEIEMPTTLGYNRDSSSSSSKLSSPTAGETSVHHQPFPASQTPTLIFNDQPQTSHQATTQLHQSQEPSTDPDLSSFPVVTTSITITPIASIPIPPRTAPPQTTITAIATTTALIRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLKCAACDCHRNFHRKETEGEPQQHASNYHSYHPNKHNNTHNIIPSPPLPHHNHSHLQFHTPSSSMHHRFSHGVANPTSLIPPMIAFGGGGGGAAESSSEDLNMFQSNRGGEILMQPPSMSKKRFRTKFTQQQKERMMEFAEKLGWKIQKQDEQEVQQFCSQVGVRRQVFKVWIHNNKQAMKKQQM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0240 340 Pfam ZF-HD protein dimerisation region 120 172 IPR006456 -
Lan17g0240 340 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 121 171 IPR006456 -
Lan17g0240 340 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 276 333 IPR006455 -
Lan17g0240 340 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 122 171 IPR006456 -
Lan17g0240 340 MobiDBLite consensus disorder prediction 172 198 - -
Lan17g0240 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 338 - -
Lan17g0240 340 MobiDBLite consensus disorder prediction 178 198 - -
Lan17g0240 340 MobiDBLite consensus disorder prediction 15 81 - -
Lan17g0240 340 Gene3D - 269 337 - -
Lan17g0240 340 ProSiteProfiles 'Homeobox' domain profile. 274 338 IPR001356 GO:0003677
Lan17g0240 340 SUPERFAMILY Homeodomain-like 271 337 IPR009057 -
Lan17g0240 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 56 338 - -
Lan17g0240 340 MobiDBLite consensus disorder prediction 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0240 Lan-Chr17 1637070 1639330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0240 65 340 ZF-HD Transcription Factor Family AT2G18350 45.848 2.87e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan17g0240 ZF-HD_dimer 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0240 - - lang:109332583 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0240 17 1637070 1639330 Lan18g1050 18 15663450 15664728 LSH
Lan17g0240 17 1637070 1639330 Lan6g0172 6 1261008 1262850 LSH
Lan17g0240 17 1637070 1639330 Lan18g0723 18 12556719 12557968 LSH
Lan17g0240 17 1637070 1639330 Lan6g0555 6 4842631 4843625 LSH