Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0236 ATGTCATTAAAAAGCATAGTACGAGAACTCAAGGAGATGAGGGATGGTATTGGTAGCATATCAAGGCGACGTGTAGAAAGCAGGCATTGTCACAGTTGTACAAAGTCACACATTGTTCCTGATGTAACTCCACTTGAACCTATTCGACAGGGACCATGGGCAAATCTACCTCCTGAGTTGCTCATGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGCGCTGTCATTGTTTCTTGTGCTTCAGTGTGTAAATCATGGAGGGTCGCTACAAAAGAGATTGTCAAGACTCCCGAGCAATGTGGAAGGCTCACATTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGAATCTCCAATACAGTGCTTTATCAGGAGGAACAGGGAAACTTCTACATTTCTATTGTATTTGGGTCTGGTGCCATTGGAGAATGAGGCTGATAAATTGTTATTAGCTGCCAAAAAGATAAGAAGGGCAAGAGGCACAGATTTTGTCATATCTCTAGTTGCAAATGAGTTTTCTCGATCCAGCAACACATATGTTGGAAAACTGAGGTCTAATTTTTTGGGGACCAAGTTCACTATATATGACAGCCAACCTCCATATGAAGCTGGAGTTATACCAAATAGCCGTTCTAGCAGGAAATTTCACTCTAATCAAGTATCTCCAAGAGTTCCAGCATGTAACTACGTTGTTAGCACCGTAGCTTATGAGCTCAATGTTCTTCGTACGAGAGGGCCGAGAAGAATGCATTGCACCATGAACTCCATACCCGTGTTAGCTATTCAGGAAGGGGGCAATGCTCCAACTCCCACTTCTTTTCCACAAGTTATTGATGAACATTTTTCTCCTTCATCGGCACCGAAAGGAAAAGGTCCAGTTACAGATTTGAACTCTGCAAGCCTCACAGAGCTTCCAGTTCAGAACCAAGGCTCGGTTGATCCTCTTGTACTTAAAAACAAGGCTCCCAGATGGCACGAGCAGCTGCAATGCTGGTGCCTAAATTTCAAGGGTCGTGTTACCGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAACAAGAAAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTATCCACTCTCTGCCTCCCAAGCCTTTGCAATATGCTTAAGTAGCTTTGATACAAAACCAGCCTGTGAATGA 1239 0.4366 MSLKSIVRELKEMRDGIGSISRRRVESRHCHSCTKSHIVPDVTPLEPIRQGPWANLPPELLMDIIRRVEESETSWPARAVIVSCASVCKSWRVATKEIVKTPEQCGRLTFPISLKQPGPRESPIQCFIRRNRETSTFLLYLGLVPLENEADKLLLAAKKIRRARGTDFVISLVANEFSRSSNTYVGKLRSNFLGTKFTIYDSQPPYEAGVIPNSRSSRKFHSNQVSPRVPACNYVVSTVAYELNVLRTRGPRRMHCTMNSIPVLAIQEGGNAPTPTSFPQVIDEHFSPSSAPKGKGPVTDLNSASLTELPVQNQGSVDPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSASQAFAICLSSFDTKPACE* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0236 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Lan17g0236 412 SUPERFAMILY F-box domain 47 96 IPR036047 GO:0005515
Lan17g0236 412 PANTHER TUBBY-RELATED 1 412 - -
Lan17g0236 412 Pfam Tub family 114 407 IPR000007 -
Lan17g0236 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Lan17g0236 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Lan17g0236 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Lan17g0236 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Lan17g0236 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Lan17g0236 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Lan17g0236 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Lan17g0236 412 Pfam F-box domain 53 100 IPR001810 GO:0005515
Lan17g0236 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
Lan17g0236 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 412 - -
Lan17g0236 412 Gene3D - 47 103 - -
Lan17g0236 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Lan17g0236 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0236 Lan-Chr17 1603758 1607085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0236 1 412 TUB Transcription Factor Family AT2G18280 64.096 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan17g0236 Tub 4.3e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0236 K19600 - gmx:100798958 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0236 17 1603758 1607085 Lan18g1051 18 15673092 15676238 LSH
Lan17g0236 17 1603758 1607085 Lan6g0174 6 1270441 1273786 LSH