Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0232 ATGAATGATCTAATGACAAGTTCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGCACAGAAGGACATTGAGAAAGACTATTTTGACATTGAAGCAGGGCAACTCAACCCAACGCAAGACCCTAACCTCTCTCAGTTCTTCACAGAAGTTGATGGAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTCAGACAATTGAACGAGGAGACAAAATCCACTCATAGTGCCAAAGTCCTTCGTGGCCTAAGGGACCGTATGGAGTCTGACATGGTTGCGGTGCTGCGCAAGGCCAAGATTGTCAAGGCAAGGCTTGAGGCTCTTGACAAGTCCAACATTGCCAATCAAAGCATATCAGAATCCTACAAAGAGGGTACCCCCATTTATAGGACCAGGATGTCTGTCACAAATGGTTTGAGGGTCAAACTTAGGGACATGATGAATGATTTTCATTCCTTGAGGGACAAGATTCTATCTGAGCACAAGGAAGATTTGAAGAGAAGGTACTATACTGCGACCGGTGAGGTTCCAAGTGAGGAGGCCATGGAGAAGATGATCTCAGGGAGCCTCAGAGTTGAGTTTTTGGCTGGGAAAACTGAGGCTGATATGGGTACTCAAGTTAGGCATGAGGCTGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAAGTGTTTCTTGATATGGCTATTCTTGTTGAGACCCAAGGAGAAAAAGTGGATAACATTGAGGATAATGTGGTAAAGGCAGGTAACTTCATCCATGGTGGGACCAATAGTCTTTACTTTGCCAATCAGATGAAGAATAGGAGCAAAAAATGGGTTCTATGGGTTTGTGCTGTGGTGCTGATTATACTGATAGTATGCATCATTGCAATGTTGTCTTCTTGA 900 0.4322 MNDLMTSSFLSYVELKKQAQKDIEKDYFDIEAGQLNPTQDPNLSQFFTEVDGIKVEMEEITNLLFDLRQLNEETKSTHSAKVLRGLRDRMESDMVAVLRKAKIVKARLEALDKSNIANQSISESYKEGTPIYRTRMSVTNGLRVKLRDMMNDFHSLRDKILSEHKEDLKRRYYTATGEVPSEEAMEKMISGSLRVEFLAGKTEADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKVDNIEDNVVKAGNFIHGGTNSLYFANQMKNRSKKWVLWVCAVVLIILIVCIIAMLSS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0232 299 Coils Coil 53 73 - -
Lan17g0232 299 CDD SNARE_syntaxin1-like 209 264 - -
Lan17g0232 299 SMART tSNARE_6 200 267 IPR000727 -
Lan17g0232 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Lan17g0232 299 SMART SynN_4 38 165 IPR006011 GO:0016020
Lan17g0232 299 Gene3D - 201 298 - -
Lan17g0232 299 PANTHER SYNTAXIN-112 3 295 - -
Lan17g0232 299 Pfam Syntaxin 45 240 IPR006011 GO:0016020
Lan17g0232 299 Gene3D - 38 169 - -
Lan17g0232 299 PANTHER SYNTAXIN 3 295 IPR045242 -
Lan17g0232 299 SUPERFAMILY t-snare proteins 40 260 IPR010989 GO:0016020|GO:0016192
Lan17g0232 299 CDD SynN 43 195 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0232 Lan-Chr17 1592390 1594160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0232 1 299 SNARE and Associated Proteins AT2G18260 59.091 3.42e-129 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0232 K08486 - gmx:112997615 480.33