Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0226 ATGAAATATACTTTTTCTTTTTTGAGTGGCTTTCGATCAGCATCATCATGGTTCGAGCTTTATGCTACATTTTCCACATTCATGATGCTTCTTCGAACAGTCATCAATGATGTCGTACCTGACAAAGTTCGAACATATATCACCACAAAGCTAGAAGAATTCTTCTCCTATTCCCCACCAGATAACATGGTATCTCTCACAATTAACCAATCTTGGGATGAGAGGTGTGGAAACAATAATCAACTTTACGAGGCTGTGTTCTACTACCTTCCCTTGAGGGTAACAAGAACATACAAATCGCTCAAAATTGGCAAACTAGATGAACGGAAAGACCTTGTGTTTGCTGTGGATGCAAAAGAAGAGGTGGTAGATGAATTTGAAGGCATCAAATTCAAATGGGTGCTAGATGATGGTTCAAAAGATGAAGAAAGGGTTTCCAACAAGCGTGAATTTAAACTAAGCTTCCATGAGAAGCATAGAGAAATAGTGGTCAAAAAGTATATACCATATATACTTGGAACTTATGAGACCATGGAGAGTGAAAGGAGGATTATTAAGCTCAATTCCTGGTCATATCATGACTGGAATGGCACTGATTTATCACATCCTGCCACATTTGACTCAATTGCCTTAGATCCTGAGTTGAAGAAGAGTATCATTGATGACTTAGAACGGTTCTTGAAGAGAAAAGAAATGTACAAGAAAGTGGGCAAGCCTTGGAAACGTGGTTACTTACTGTATGGTCCTCCAGGAACCGGAAAATCTAGCCTCATTGCAGCTATGGCCAACTATTTGAAATTTGATGTGTATGATTTAGATCTAAACTCTATTAACTCTAATTCAGAACTCATGGCAGCCATGAGGAGAACCTCAAGACGTTCTATCATCGTGCTTGAAGACATAGACTGCAACAAAGAGGTAAATACTCGATTAAATGCACCCAGGGTACCGTATGACACAGACTCAGATGAACTTCTTGGTGCTTGCCTTGATGATGATTTCAAGGTTGATGATGCCAATGTTGATGATGCCAATGTTGATGATGCCAAGGGTGACACGTTTACATTATCTGGTCTACTTAATTGTGTGGATGGGTTGTGGTCAAGCCATGGAGAGGAGAGGATTACAATATTTACTACAAACCATGTCGAAAAAATTGATCCAGCATTGTTGCGCCCCGGTCGAATGGACGTGCACATTAACCTGTCATACCTTAAGGCCAAAGCATTCAGAGTTTTAGCCTCCAATTATCTGGACATTCAAGACCATCCACTCTTTGAACAAATTGAAGACTTGTTGGAGAAAACAGAGTTCACCCCTGCAGAAGTGGCAGAGCAGCTACTAAGAAGTGAAGATCCTGATATTGCTTTAGATCAACTATTGAAATTTCTCACAAAAAGGGCATGA 1407 0.4001 MKYTFSFLSGFRSASSWFELYATFSTFMMLLRTVINDVVPDKVRTYITTKLEEFFSYSPPDNMVSLTINQSWDERCGNNNQLYEAVFYYLPLRVTRTYKSLKIGKLDERKDLVFAVDAKEEVVDEFEGIKFKWVLDDGSKDEERVSNKREFKLSFHEKHREIVVKKYIPYILGTYETMESERRIIKLNSWSYHDWNGTDLSHPATFDSIALDPELKKSIIDDLERFLKRKEMYKKVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLDLNSINSNSELMAAMRRTSRRSIIVLEDIDCNKEVNTRLNAPRVPYDTDSDELLGACLDDDFKVDDANVDDANVDDAKGDTFTLSGLLNCVDGLWSSHGEERITIFTTNHVEKIDPALLRPGRMDVHINLSYLKAKAFRVLASNYLDIQDHPLFEQIEDLLEKTEFTPAEVAEQLLRSEDPDIALDQLLKFLTKRA* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0226 468 ProSitePatterns AAA-protein family signature. 374 392 IPR003960 GO:0005524|GO:0016887
Lan17g0226 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 450 IPR027417 -
Lan17g0226 468 Gene3D - 196 400 IPR027417 -
Lan17g0226 468 Pfam Domain associated at C-terminal with AAA 39 134 IPR025753 -
Lan17g0226 468 Gene3D - 401 468 - -
Lan17g0226 468 SMART AAA_5 240 406 IPR003593 -
Lan17g0226 468 Pfam ATPase family associated with various cellular activities (AAA) 245 303 IPR003959 GO:0005524|GO:0016887
Lan17g0226 468 Pfam ATPase family associated with various cellular activities (AAA) 351 403 IPR003959 GO:0005524|GO:0016887
Lan17g0226 468 CDD AAA 241 302 - -
Lan17g0226 468 PANTHER BCS1 AAA-TYPE ATPASE 10 465 - -
Lan17g0226 468 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 10 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0226 Lan-Chr17 1547454 1549380 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0226 214 397 Calmodulin-binding Proteins AT3G56690 26.630 2.99e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0226 - K08900 gmx:100789094 552.747