Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0213 ATGGGTCGTGGGAAGATAGAGATAAAGTTGATAGAGAACCCTACTAACAGGCAAGTTACCTACTCAAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAGCTCAGTGTTCTATGTGATGCTAAGGTCTCTCTTATCATGTTCTCCAAAAACAACAAGATGCATGAATACATCAGCCCTGGCCTCACGACAAAAAAGGTCATTGATCAGTATCAGAAGACCTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTGCAAAACTTGAAGAAACTGAATGATATTAACCATAAACTCAGAAGACAGATCAGGCATAGGATAGGTGAGGGCTTGGACGATGATCTGAGCTTCCAGCAACTGCGCAGTCTTGAAGAAGATATGGTTTCTTCCATTGGTAAAATACGTGAAAGAAAGTTCCATGTGATCAAAACTCGGACAGATACCTGCAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAATGGAAATCTCCTACTTGAACTTGAAAAATGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGATCCTGAATCAGCAGTTGCACTGGCCAATGGTGCCTCAAACCTGTATGCATTCTGTCAGCACCAAACTCATCTGAATCTTCATCATCATCACCTTCAAGATCATCAAGATCAAGGATTTAAAACTAATGATCTGCGCCTTGCTTAA 702 0.416 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKVIDQYQKTLGDIDLWRSHYEKMLQNLKKLNDINHKLRRQIRHRIGEGLDDDLSFQQLRSLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLLHDEGDPESAVALANGASNLYAFCQHQTHLNLHHHHLQDHQDQGFKTNDLRLA* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0213 233 Coils Coil 85 105 - -
Lan17g0213 233 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lan17g0213 233 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Lan17g0213 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan17g0213 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Lan17g0213 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan17g0213 233 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 233 - -
Lan17g0213 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan17g0213 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan17g0213 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan17g0213 233 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lan17g0213 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lan17g0213 233 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan17g0213 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan17g0213 233 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0213 Lan-Chr17 1458977 1461118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0213 1 220 MADS-box Gene Family AT3G54340 49.321 1.46e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan17g0213 K-box 4.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0213 K09264 - gmx:100784496 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0213 17 1458977 1461118 Lan6g0191 6 1396054 1420856 LSH